change the tiffslide to openslide

benmalef · Oct 18, 2024 · 3a6e11e · 3a6e11e
1 parent f2996e6
commit 3a6e11e
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/GANDLF/data/patch_miner/opm/patch_manager.py b/GANDLF/data/patch_miner/opm/patch_manager.py
@@ -7,7 +7,7 @@
 from tqdm import tqdm
 from pathlib import Path
 import pandas as pd
-import tiffslide
+import openslide as tiffslide
 
 
 class PatchManager:

diff --git a/GANDLF/data/patch_miner/opm/utils.py b/GANDLF/data/patch_miner/opm/utils.py
@@ -17,7 +17,7 @@
 
 # import matplotlib.pyplot as plt
 import yaml
-import tiffslide
+import openslide as tiffslide
 
 # RGB Masking (pen) constants
 RGB_RED_CHANNEL = 0

diff --git a/setup.py b/setup.py
@@ -6,14 +6,14 @@
 import sys, re, os
 from setuptools import setup, find_packages
 
+
 try:
     with open("README.md") as readme_file:
         readme = readme_file.read()
 except Exception as error:
     readme = "No README information found."
     sys.stderr.write("Warning: Could not open '%s' due %s\n" % ("README.md", error))
 
-
 try:
     filepath = "GANDLF/version.py"
     version_file = open(filepath)