Add pyndantic config #228
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: OpenFL-Test | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: {} | |
| env: | |
| # A workaround for long FQDN names provided by GitHub actions. | |
| FQDN: "localhost" | |
| jobs: | |
| openfl-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Call reusable workflow to install dependencies | |
| id: dependencies | |
| uses: ./.github/workflows/dependencies | |
| - name: Run generic unit tests to download data and construct CSVs | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml -k "prepare_data_for_ci" | |
| # openfl tests start here | |
| - name: Run OpenFL tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| echo "Removing onnx because of protobuf version conflict" | |
| pip uninstall onnx -y | |
| echo "Installing OpenFL" | |
| git clone --depth=1 https://github.com/securefederatedai/openfl.git | |
| cd openfl | |
| git fetch --tags | |
| # echo "Checkout the latest OpenFL tag" | |
| # latestTag=$(git describe --tags "$(git rev-list --tags --max-count=1)") | |
| # git checkout $latestTag | |
| # sed -i -e 's/protobuf==3.19.6/protobuf/g' setup.py ## this should NOT be there | |
| pip install -e . | |
| cd .. | |
| echo "Copying files to appropriate directories and updated headers" | |
| head -n 1 testing/data/train_2d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv | |
| tail -n +9 testing/data/train_2d_rad_segmentation.csv >> /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv | |
| head -n 8 testing/data/train_2d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/train.csv | |
| sed -i 's/# n_channels: 3/num_channels: 3/g' testing/config_segmentation.yaml | |
| config_to_use=$(pwd)/testing/config_segmentation.yaml | |
| cd openfl | |
| python -m tests.github.test_gandlf --template gandlf_seg_test --fed_workspace aggregator --col1 one --col2 two --rounds-to-train 1 --gandlf_config $config_to_use | |