Add pyndantic config #223
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI-PyTest | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: {} | |
| jobs: | |
| full-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Call reusable workflow to install dependencies | |
| id: dependencies | |
| uses: ./.github/workflows/dependencies | |
| - name: Run generic unit tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml -k "generic" | |
| - name: Run classification unit tests with histology | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "classification and histology" | |
| - name: Run classification unit tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "classification and not histology" | |
| - name: Run segmentation unit tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "segmentation and not transunet" | |
| - name: Run regression unit tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "regression" | |
| - name: Run transunet unit tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "transunet" | |
| - name: Run entrypoints tests | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "entrypoints" | |
| - name: Run test for update_version | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| run: | | |
| pytest --cov=. --cov-report=xml --cov-append -k "update_version" | |
| - name: Upload coverage | |
| if: ${{steps.dependencies.outputs.other_modified_files_count > 0}} # Run on any non-docs change | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| flags: unittests | |
| - name: Upload coverage to Codacy | |
| if: github.ref == 'refs/heads/master' # only run when on master | |
| uses: codacy/[email protected] | |
| with: | |
| project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| coverage-reports: ./coverage.xml |