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DEV: Can now double-handle --profile #20

DEV: Can now double-handle --profile

DEV: Can now double-handle --profile #20

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: CI
on:
push:
branches: [ "main" ]
paths:
- '.github/**'
- 'build/**'
- 'tests/**'
- '{{cookiecutter.project_slug}}/**'
pull_request:
branches: [ "main" ]
paths:
- '.github/**'
- 'build/**'
- 'tests/**'
- '{{cookiecutter.project_slug}}/**'
permissions:
contents: read
jobs:
tests:
name: "Python ${{ matrix.python-version }} on ${{ matrix.os }}"
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -el {0}
strategy:
matrix:
os: [macos-12, ubuntu-latest]
python-version: ["3.9", "3.10", "3.11"]
steps:
- uses: "actions/checkout@v3"
with:
fetch-depth: 0
# Setup env
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: snaketool
environment-file: build/environment.yaml
python-version: ${{ matrix.python-version }}
auto-activate-base: false
- name: "Setup Snaketool on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
run: |
cookiecutter --no-input ./
cd my_snaketool/
python -m pip install --upgrade pip
pip install .
- name: "Generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
run: |
pip install pytest pytest-cov
pytest --cov=./ --cov-report=xml --cov-append