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NanoSim v2.5.1
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@cheny19 cheny19 released this 24 Jan 01:49
· 147 commits to master since this release
v2.5.1
528a78e

To download only the source scripts, please go to url

Features

  1. In this release, we provide 6 pre-trained models, including 3 RNA-seq models, which are human direct RNA, cDNA, mouse cDNA, and 3 DNA-seq models, which are human DNA dataset basecalled by 3 different basecalling algorithms. These models can be downloaded from pre-trained_models.

  2. We also provide a few more homopolymer models to mimic different basecalling algorithms under different sequencing settings (direct RNA or cDNA 1D2 or cDNA 1D).

  3. We implemented -r, --read_type in transcriptome simulation mode. Since different read type, directRNA, cDNA 1D2, or cDNA 1D, has an effect on the homopolymer bias, users can specify which one to simulate based on.

Minor bug fixes

  1. A minor bug in detect_ir module in the characterization stage.

  2. Prevents python from spawning out processes when only one processor is requested.

  3. Display the correct help information for transcriptome simulation when wrong parameters are passed in.

Assets 3
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