edit sample.yaml

bcgsc · Jan 20, 2023 · e51513f · e51513f
1 parent 88bc0ab
commit e51513f
Showing 1 changed file with 1 addition and 18 deletions.
diff --git a/config/samples.yaml b/config/samples.yaml
@@ -1,10 +1,6 @@
 # sample name must match the sample ID on the RPKM matrix
 samples:
-    exampleInputAlignment:
-        R1: 
-
-        R2:
-
+    exampleSample:
         rna:
             /path/to/RNA/alignment.bam
         phase:
@@ -13,16 +9,3 @@ samples:
             /path/to/cnv/data # Does not need to be included if cancer_analysis = False
         methyl:
             /path/to/methyl/data.bed # Does not need to be included if cancer_analysis = False
-    exampleInputRead:
-        R1: 
-            /path/to/RNA/short/read/R1_file.fa
-        R2:
-            /path/to/RNA/short/read/R2_file.fa
-        rna:
-
-        phase:
-            /path/to/phase.vcf 
-        cnv:
-            /path/to/cnv/data
-        methyl:
-            /path/to/methyl/data.bed