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skyfocus: when using PROJECT.scl file, don't attempt to infer using t…
…he top level packages. This makes the working set derivation less confusing by not keeping files that aren't specified in the PROJECT.scl file. PiperOrigin-RevId: 655974491 Change-Id: I89c73e77bdc8e07be77570cfb8c18d5aed8ad9f4
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