fix: apply patches to entry module file #58
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If an included patch patches MODULE.bazel, then it needs to be applied to the copy of MODULE.bazel in the bcr entry because it must be identical to the extracted-and-patched version.
Closes #57.
Example entry: https://github.com/publish-to-bcr-dev-registry/bazel-central-registry/pull/63/files