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Merge pull request #9 from mtrsl/some_tidying Cargo Build & Test #130: Commit f880427 pushed by jhellewell14
January 6, 2025 08:21 1m 31s main
main
January 6, 2025 08:21 1m 31s
Huge changes as I tried to make tree moves use an iterator, broke eve… Cargo Build & Test #129: Commit 702ad73 pushed by jhellewell14
December 16, 2024 11:19 1m 29s main
main
December 16, 2024 11:19 1m 29s
Was not using rate matrix values after it had potentially been update… Cargo Build & Test #128: Commit f1fdbdf pushed by jhellewell14
December 4, 2024 14:48 1m 38s main
main
December 4, 2024 14:48 1m 38s
Rewrote move apply method for TreeState as an implementation of an It… Cargo Build & Test #127: Commit 476a28c pushed by jhellewell14
December 4, 2024 08:27 1m 44s main
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December 4, 2024 08:27 1m 44s
Added a branchlength move Cargo Build & Test #126: Commit cca6fe3 pushed by jhellewell14
December 2, 2024 10:09 1m 27s main
main
December 2, 2024 10:09 1m 27s
Lots of cleaning up old code and fixing clippy suggestions Cargo Build & Test #125: Commit cadebdc pushed by jhellewell14
November 29, 2024 11:50 1m 53s main
main
November 29, 2024 11:50 1m 53s
Integrating new TreeState struct and TreeMove trait into code Cargo Build & Test #124: Commit d1edf0b pushed by jhellewell14
November 29, 2024 11:13 1m 26s main
main
November 29, 2024 11:13 1m 26s
Wrote a load of code in lib.rs that generalises applying move functio… Cargo Build & Test #123: Commit 49e0bb4 pushed by jhellewell14
November 29, 2024 09:31 1m 25s main
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November 29, 2024 09:31 1m 25s
fixing tests Cargo Build & Test #122: Commit add74da pushed by jhellewell14
November 27, 2024 14:25 1m 23s main
main
November 27, 2024 14:25 1m 23s
Added rate matrix update move, need to think more on how moves should… Cargo Build & Test #121: Commit 8fcad35 pushed by jhellewell14
November 27, 2024 11:17 1m 42s main
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November 27, 2024 11:17 1m 42s
Added implemention for RateMatrix trait that does a matrix move for e… Cargo Build & Test #120: Commit 7aa644b pushed by jhellewell14
November 26, 2024 15:33 1m 29s main
main
November 26, 2024 15:33 1m 29s
Fixed child swap move code. Was not updating node depths in the subtr… Cargo Build & Test #119: Commit 44624fc pushed by jhellewell14
November 21, 2024 14:57 1m 27s main
main
November 21, 2024 14:57 1m 27s
Half way through adding new Topology move type that I think makes mor… Cargo Build & Test #118: Commit d5ac120 pushed by jhellewell14
November 20, 2024 17:32 1m 22s main
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November 20, 2024 17:32 1m 22s
Fixing discrepancies between number of sequences and resulting geneti… Cargo Build & Test #117: Commit 1071f17 pushed by jhellewell14
November 15, 2024 10:37 1m 20s main
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November 15, 2024 10:37 1m 20s
Fixed likelihood tests for new data format. Added a function that cre… Cargo Build & Test #116: Commit 09d046f pushed by jhellewell14
November 12, 2024 10:50 1m 28s main
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November 12, 2024 10:50 1m 28s
initial go at nearest neighbour interchange MoveFn in new data structure Cargo Build & Test #115: Commit cf08062 pushed by jhellewell14
October 31, 2024 14:59 1m 23s main
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October 31, 2024 14:59 1m 23s
Fixed optimisation code in lib.rs Cargo Build & Test #114: Commit d30e1ad pushed by jhellewell14
October 31, 2024 14:16 1m 24s main
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October 31, 2024 14:16 1m 24s
Added peturb vector MoveFn, put moves in their own file Cargo Build & Test #113: Commit fe55757 pushed by jhellewell14
October 31, 2024 14:05 1m 31s main
main
October 31, 2024 14:05 1m 31s
Wrote functions to apply move functions (with corresponding trait) Cargo Build & Test #112: Commit 9b82761 pushed by jhellewell14
October 31, 2024 12:22 1m 50s main
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October 31, 2024 12:22 1m 50s
Huge underlying changes to data structure. Separated tree topology in… Cargo Build & Test #111: Commit 4542e03 pushed by jhellewell14
October 28, 2024 14:17 1m 47s main
main
October 28, 2024 14:17 1m 47s
Build was failing because I hadn't pushed Cargo.toml changes Cargo Build & Test #110: Commit 19d5926 pushed by jhellewell14
October 10, 2024 08:27 1m 14s main
main
October 10, 2024 08:27 1m 14s
Added Tree method to do NNI. At the moment it just does a NNI. What I… Cargo Build & Test #109: Commit fbbe614 pushed by jhellewell14
October 9, 2024 09:09 1m 14s main
main
October 9, 2024 09:09 1m 14s
Added Tree method to get all branch lengths in an nalgebra Vector so … Cargo Build & Test #108: Commit 3468ab3 pushed by jhellewell14
October 1, 2024 09:44 1m 18s main
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October 1, 2024 09:44 1m 18s
Added JC69 evolution model Cargo Build & Test #107: Commit 0623118 pushed by jhellewell14
September 27, 2024 08:39 1m 15s main
main
September 27, 2024 08:39 1m 15s
Introduced a RateMatrix trait that will allow us to define multiple n… Cargo Build & Test #106: Commit c8790d6 pushed by jhellewell14
September 26, 2024 14:49 1m 15s main
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September 26, 2024 14:49 1m 15s