Whitespace removal

bacpop · Aug 6, 2024 · d53dbf8 · d53dbf8
1 parent 8a93037
commit d53dbf8
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/PopPUNK/assign.py b/PopPUNK/assign.py
@@ -366,7 +366,7 @@ def assign_query_hdf5(dbFuncs,
     from .utils import readPickle
     from .utils import update_distance_matrices
     from .utils import createOverallLineage
-    
+
     failed_assembly_qc = {}
     failed_assembly_samples = frozenset()
     if qc_dict["run_qc"]:
@@ -378,7 +378,7 @@ def assign_query_hdf5(dbFuncs,
     if len(failed_assembly_qc) > 0:
         sys.stderr.write(f"{len(failed_assembly_qc)} samples failed:\n"
                             f"{','.join(failed_assembly_samples)}\n")
-        
+
         qNames = [x for x in qNames if x in pass_assembly_qc]
         if len(qNames) == 0:
             write_qc_failure_report(failed_assembly_samples, [failed_assembly_qc], output)
@@ -492,13 +492,13 @@ def assign_query_hdf5(dbFuncs,
         # QC distance matrix
         if qc_dict['run_qc']:
             sys.stderr.write("Running QC on distance matrix\n")
-            seq_names_passing, failed_distmatrix_qc = qcDistMat(qrDistMat, rNames, qNames, ref_db, qc_dict)            
+            seq_names_passing, failed_distmatrix_qc = qcDistMat(qrDistMat, rNames, qNames, ref_db, qc_dict)
             failed_distmatrix_samples = frozenset(qNames) - frozenset(seq_names_passing)
             if len(failed_distmatrix_samples) > 0:
                 sys.stderr.write(f"{len(failed_distmatrix_samples)} samples failed:\n"
                                  f"{','.join(failed_distmatrix_samples)}\n")
                 write_qc_failure_report(failed_distmatrix_samples | failed_assembly_samples, [failed_distmatrix_qc, failed_assembly_qc], output)
-                
+
                 if len(failed_distmatrix_samples) == len(qNames):
                     sys.exit(1)
                 else:

diff --git a/PopPUNK/network.py b/PopPUNK/network.py
@@ -1448,7 +1448,7 @@ def printClusters(G, rlist, outPrefix=None, oldClusterFile=None,
         oldClusters = oldAllClusters[list(oldAllClusters.keys())[0]]
         # parse all previously used clusters, including those that are merged
         parsed_oldClusters = set([int(item) for sublist in (x.split('_') for x in oldClusters) for item in sublist])
-        
+
         new_id = max(parsed_oldClusters) + 1 # 1-indexed
         while new_id in parsed_oldClusters:
             new_id += 1 # in case clusters have been merged