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chore(KSA-Dafny): refactor code for model changes and more
Initialize Mutation and Apply Mutation MUST ensure that the UUID of the Index and Commitment agree. Apply MUST ensure that the UUID of the Commitment and Token agree. The Mutation Token's UUID is REQUIRED. It is how we track a mutation, much like how CFN tracks a change set. Fixed bug where UUID is a reserved word in DDB. Refactored some of the error messages. Utilize Java Example to demonstrate resume and restart. Finally, addressed some of the feedback on PR #854.
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