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fix: perform appropriate cleanup after seqrepo check #59

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merged 2 commits into from
Jul 19, 2024
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fix: perform appropriate cleanup after seqrepo check #59

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fix: perform appropriate cleanup after seqrepo check
jsstevenson Jul 19, 2024
87caedd
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jsstevenson Jul 19, 2024
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3 changes: 3 additions & 0 deletions src/dcd_mapping/lookup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -405,6 +405,9 @@ def check_seqrepo() -> None:
except sqlite3.Error as e:
_logger.error("SeqRepo sequences DB isn't writeable.")
raise DataLookupError from e
# delete the CST instance so that future calls are made against an open SeqAlias
# connection, since we close it above
del CoolSeqToolBuilder.instance


def get_chromosome_identifier(chromosome: str) -> str:
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