Code

package development/refactor work#27

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Merged

jsstevenson merged 18 commits intoave-dcd:devave-dcd/dcd_mapping:devfrom GenomicMedLab:mainGenomicMedLab/dcd_mapping:mainCopy head branch name to clipboardFeb 1, 2024

+5,808-42

Commits

Commits on Aug 31, 2023

• chore: add boilerplate elements and repo skeleton (#1)

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  afbe4c4

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Commits on Sep 1, 2023

• feat: add data acquisition methods (#2)

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  60cde35

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• feat: add initial alignment draft (#3)

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Commits on Oct 5, 2023

• feat: initial transcript selection draft (#4)

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  7ec36d2

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Commits on Jan 15, 2024

• feat: initial VRS mapping draft (#5)

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  1686b95

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• feat: add BLAT output caching/reusing (#6)

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  d39681e

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Commits on Jan 21, 2024

• refactor: major edits to VRS mapping and supporting methods (#7)

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  8c728f5

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Commits on Jan 22, 2024

• test: fix VRS object test cases (#8)

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  5f831a2

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• chore: update project metadata (#9)

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  bf7129b

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• chore: clean up unused code/docstring notes (#10)

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  0bc6969

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Commits on Jan 25, 2024

• fix: don't use dnax query for dna target sequences (#11)

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  cd9573a

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• test: bolster align tests (#12)

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  3a166a0

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• update TODO

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  6c703ab

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• test: minor bug-hunting resource rearrangement

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  092f3c0

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• update TODO

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  b855c5d

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• test: add transcript selection checks (#13)

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  b1ccfce

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• cicd: update linting check (#14)

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  9a2ee61

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Commits on Feb 1, 2024

• Update TODO.md

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