re-add metadata_process.py #28
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python package | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| env: | |
| PATH_TO_SEQREPO: ./tests/data/seqrepo/latest | |
| HG38_FILE: ./tests/data/hg38.2bit | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Test with pytest | |
| env: | |
| PATH_TO_SEQREPO: ./tests/data/seqrepo/latest | |
| HG38_FILE: ./tests/data/hg38.2bit | |
| GENE_NORM_DB_URL: postgres://postgres@localhost:5432/gene_normalizer | |
| run: | | |
| export PYTHONPATH="${PYTHONPATH}:$(pwd)" | |
| pytest |