GitHub - asafpr/highlightMSA: pretty print of multiple sequence alignment to RTF files

asafpr / highlightMSA Public

Notifications You must be signed in to change notification settings
Fork 0
Star 1

pretty print of multiple sequence alignment to RTF files

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README		README
highlightMSA.py		highlightMSA.py

Repository files navigation

The module highlightMSA contains a class called hMSA that hold a multiple sequence alignment read by AlignIO of BioPython
and regions along these sequences can be painted in two colors (for now). The coloring is according to the name of the 
sequence in the MSA file (I like to use TXID as the name) and the range of nucleotides.
The other method in the module print this MSA to an RTF file (you will need PyRTF from http://pyrtf.sourceforge.net/) with 
the backgrounds of the regions colored in different colors.