Code

Porting to Arm#16

Code

Open

LorienLV wants to merge 11 commits intoarun-sub:masterarun-sub/genomicsbench:masterfrom LorienLV:arm-portingLorienLV/genomicsbench:arm-portingCopy head branch name to clipboard

+32,239-5,826

Commits

Commits on Sep 28, 2023

• BSW Arm-SVE version

  LorienLV

  committed
  c5247db

Commits on Sep 29, 2023

• CHAIN does not need minimap2 to work

  LorienLV

  committed
  fde80f4

• CHAIN Arm-specific bug fix

  LorienLV

  committed
  9d834c5

• Vectorized version of CHAIN, FAST-CHAIN, added

  LorienLV

  committed
  262de4c

• KMER-CNT now uses OpenMP to make thread binding easier

  LorienLV

  committed
  228bf7e

Commits on Oct 2, 2023

• KMER-CNT version for high-memory systems

  LorienLV

  committed
  d4232f1

• WFA with support for Arm-SVE added

  LorienLV

  committed
  33e2773

Commits on Oct 16, 2023

• Added command line parameter to KMER-CNT to select between high-memory and base versions

  LorienLV

  committed
  323b429

Commits on Nov 2, 2023

• Now WFA uses the same inputs as BSW

  LorienLV

  committed
  46c4750

Commits on Nov 3, 2023

• NN-VARIANT migrated to Clair3

  LorienLV

  committed
  bf0e194

• New kernels added to execution scripts

  LorienLV

  committed
  ce5e9b3