LC6_Analysis.R -- contains R code used for the anatomical analysis of LC6 and downstream neurons. Most EM figures (except connectivity matrices) were generated using this code.
LC6_Analysis_data.RData -- contains initial data for running LC6_Analysis.R.
LC6_Analysis_workspace.7z.001 LC6_Analysis_workspace.7z.002 LC6_Analysis_workspace.7z.003 -- need to be upzipped. It contains the full workspace for LC6_Analysis.R. So you don't have to run the processing code and can readily make figures.
LC6_Analysis_connMatrix.R -- contains R code to generate the connectivity matrices.
LC6_Analysis_connMatrix_data.RData -- contains initial data for running LC6_Analysis_connMatrix.R
The rest are data and calibration files used by LC6_Analysis.R