fixed warning message thrown when logging in #1146
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'mkdocs.yml' | |
| - 'docs/**' | |
| pull_request: {} | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: set up python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Balsam | |
| run: | | |
| make install-dev | |
| pip freeze | |
| - name: Lint | |
| run: make lint | |
| - name: Check default Site settings.yml files | |
| run: make validate-defaults | |
| - name: Mypy (type checking) | |
| run: make mypy | |
| test-linux: | |
| name: Testing with Python${{ matrix.python-version }} on Ubuntu | |
| needs: lint | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| # Docker Hub image | |
| image: postgres | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: balsam-test | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| # Maps tcp port 5432 on service container to the host | |
| - 5432:5432 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| OS: ubuntu | |
| BALSAM_TEST_DB_URL: postgresql://postgres:postgres@localhost:5432/balsam-test | |
| PYTHONUNBUFFERED: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python env | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install mpich | |
| run: sudo apt-get update && sudo apt-get install -y -q libmpich-dev | |
| - name: Install Balsam | |
| run: | | |
| make install-dev | |
| pip freeze | |
| - name: tests | |
| run: make testcov | |
| - name: Archive test logs | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: test-logs | |
| path: pytest-logs/ | |
| - run: coverage xml | |
| - uses: codecov/[email protected] | |
| with: | |
| files: ./coverage.xml | |
| env_vars: PYTHON,OS |