Merge pull request #174 from sanogenetics/hotfix/fix-genomeprep-resou…

…rces Fix GenomePrep resources
apriha · May 5, 2024 · 77407c0 · 77407c0
2 parents cb39e37 + 5a5423f
commit 77407c0
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/src/snps/resources.py b/src/snps/resources.py
@@ -287,10 +287,14 @@ def get_chip_clusters(self):
            (GenomePrep) for research, Computational and Structural
            Biotechnology Journal, Volume 19, 2021, Pages 3747-3754, ISSN
            2001-0370, https://doi.org/10.1016/j.csbj.2021.06.040.
+        2. Lu, Tzovaras, & Gough. (2021). OpenSNP data-freeze of 5,393
+           (19.10.2020) [Data set]. In Computational and Structural
+           Biotechnology Journal. Zenodo.
+           https://doi.org/10.1016/j.csbj.2021.06.040
         """
         if self._chip_clusters is None:
             chip_clusters_path = self._download_file(
-                "https://supfam.mrc-lmb.cam.ac.uk/GenomePrep/datadir/the_list.tsv.gz",
+                "https://zenodo.org/records/5047472/files/the_list.tsv.gz",
                 "chip_clusters.tsv.gz",
             )
 
@@ -325,10 +329,14 @@ def get_low_quality_snps(self):
            (GenomePrep) for research, Computational and Structural
            Biotechnology Journal, Volume 19, 2021, Pages 3747-3754, ISSN
            2001-0370, https://doi.org/10.1016/j.csbj.2021.06.040.
+        2. Lu, Tzovaras, & Gough. (2021). OpenSNP data-freeze of 5,393
+           (19.10.2020) [Data set]. In Computational and Structural
+           Biotechnology Journal. Zenodo.
+           https://doi.org/10.1016/j.csbj.2021.06.040
         """
         if self._low_quality_snps is None:
             low_quality_snps_path = self._download_file(
-                "https://supfam.mrc-lmb.cam.ac.uk/GenomePrep/datadir/badalleles.tsv.gz",
+                "https://zenodo.org/records/5047472/files/badalleles.tsv.gz",
                 "low_quality_snps.tsv.gz",
             )