Contains code that process mitgcm output for the EQUINOx project

• datarmor/ : code for launching

• shallow_equinox/ : utils, preprocessing and postprocessing

• doc/ : conda and git info

---

install

Needs update

All scripts require python librairies that may be installed with conda according to the following instructions here

Dependencies

---

run on datarmor:

Needs update

After having installed all libraries, and cloned this repository, go into mit_equinox/datarmor.

./launch-jlab.sh

Follow instructions that pop up from there.

The spin up of dask relies on dask-jobqueue:

from dask_jobqueue import PBSCluster
local_dir = os.getenv('TMPDIR')
cluster = PBSCluster(local_directory=local_dir)
w = cluster.start_workers(10)

from dask.distributed import Client
client = Client(cluster)

Kill jobs once done with computations in a notebook with:

cluster.stop_workers(cluster.jobs)

or in a shell with python kill.py.

Clean up after computations: ./clean.sh