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Floating point exception in mxnet.ndarray.op.random_pdf_dirichlet #18936

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leeyeetonn opened this issue Aug 16, 2020 · 6 comments · Fixed by #19878
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Floating point exception in mxnet.ndarray.op.random_pdf_dirichlet #18936

leeyeetonn opened this issue Aug 16, 2020 · 6 comments · Fixed by #19878
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Bug C++ Related to C++ good first issue Operator v1.x Targeting v1.x branch

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@leeyeetonn
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Description

(A clear and concise description of what the bug is.)
mxnet.ndarray.op.random_pdf_dirichlet has floating point exception when given sample's shape has 0. Please see the provided code as example.

Error Message

(Paste the complete error message. Please also include stack trace by setting environment variable DMLC_LOG_STACK_TRACE_DEPTH=10 before running your script.)

Floating point exception (core dumped)

To Reproduce

(If you developed your own code, please provide a short script that reproduces the error. For existing examples, please provide link.)

import mxnet
import numpy as np
sample = mxnet.nd.array(np.random.rand(4,0))
alpha = mxnet.nd.array(np.random.rand(1))
mxnet.ndarray.op.random_pdf_dirichlet(sample=sample, alpha=alpha)

Steps to reproduce

(Paste the commands you ran that produced the error.)

  1. run the provided code in python interpreter or as a script

What have you tried to solve it?

Environment

We recommend using our script for collecting the diagnositc information. Run the following command and paste the outputs below:

curl --retry 10 -s https://raw.githubusercontent.com/dmlc/gluon-nlp/master/tools/diagnose.py | python

# paste outputs here

Got 404 when trying to get the script.

Some environment information:

  • OS: ubuntu 18.04
  • Python: 3.7.6
  • pip: 20.0.2
  • numpy: 1.18.5
  • mxnet: 1.6.0
@szha
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szha commented Aug 16, 2020

@leeyeetonn thanks a lot for identifying and reporting these issues (#18927, #18933, #18934, and this). it's very helpful.

I think a general problem for these issues is that FPE exits the program without a stacktrace. I will work on improving the signal handler to treat it as a regular runtime error instead.

@leeyeetonn
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@szha Thanks for your feedback! I agree. They should not have FPEs but rather runtime exceptions in python. I believe each one of them requires some additional input validity checks.

I have a few more cases of FPEs caused by similar kind of input. If you don't mind, I'd like to report them as individual issues which is helpful to keep track of things.

@xidulu
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xidulu commented Aug 20, 2020

@leeyeetonn
I guess this issue should be resolved now according to #18956 (if my understand is correct) authored by @szha

@szha
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szha commented Aug 20, 2020

Yes, FPE should no longer abort the program now. The bug still needs to be fixed

@szha
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szha commented Aug 21, 2020

So here's the problem:

% DMLC_LOG_STACK_TRACE_DEPTH=150 MXNET_ENGINE_TYPE=NaiveEngine lldb python3.7 -- test_18936.py
(lldb) target create "python3.7"
Current executable set to 'python3.7' (x86_64).
(lldb) settings set -- target.run-args  "test_18936.py"
(lldb) run
Process 27100 launched: '/usr/local/bin/python3.7' (x86_64)
Process 27100 stopped
* thread #2, stop reason = exec
    frame #0: 0x0000000100006000 dyld`_dyld_start
dyld`_dyld_start:
->  0x100006000 <+0>: popq   %rdi
    0x100006001 <+1>: pushq  $0x0
    0x100006003 <+3>: movq   %rsp, %rbp
    0x100006006 <+6>: andq   $-0x10, %rsp
(lldb) cont
Process 27100 resuming
[23:14:55] ../src/engine/engine.cc:55: MXNet start using engine: NaiveEngine
[23:14:55] ../src/storage/storage.cc:198: Using Pooled (Naive) StorageManager for CPU
Process 27100 stopped
* thread #2, queue = 'com.apple.main-thread', stop reason = EXC_ARITHMETIC (code=EXC_I386_DIV, subcode=0x0)
    frame #0: 0x0000000116f5b318 libmxnet.dylib`void mxnet::op::mxnet_op::Kernel<mxnet::op::LaunchExWrapper<mxnet::op::PDF_Dirichlet<false> >, mshadow::cpu>::LaunchEx<int, int, float*, float*, float*>(mshadow::Stream<mshadow::cpu>*, unsigned long, int, int, float*, float*, float*) at pdf_op.h:443
   440 	    index_t i = start;
   441
   442 	    // Get aligned
-> 443 	    const index_t align_step = sample_size - (i % sample_size);
   444 	    const index_t first_stride = length > align_step ? align_step : length;
   445 	    OP::Map(i, first_stride, sample_size, args...);
   446 	    i += first_stride;

https://github.com/apache/incubator-mxnet/blob/9bdd4d6347c284770ee5bfe5ae98f1dabc283829/src/operator/random/pdf_op.h#L443

The code needs to guard against zero-size array for right operand of %, and we should add a smoke test to guard against such problem in this op, similar to https://github.com/apache/incubator-mxnet/pull/18972/files

@szha
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szha commented Aug 21, 2020

@xidulu since we are deprecating ndarray in favor of np/npx, do we need to register an alias of this op in np/npx? (or is it already registered)

@szha szha added v1.x Targeting v1.x branch C++ Related to C++ good first issue and removed good first issue for c++ developer labels Aug 21, 2020
r3stl355 pushed a commit to r3stl355/incubator-mxnet that referenced this issue Feb 10, 2021
szha pushed a commit that referenced this issue Apr 30, 2021
* fix #18938

* fix #18939, #18940

* fix #18936 and #18937

Co-authored-by: r3stl355 <[email protected]>
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3 participants