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HBASE-28483 backup merge fails on bulkloaded hfiles #5795

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thomassngdata
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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 30s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for branch
+1 💚 mvninstall 3m 11s master passed
+1 💚 compile 0m 52s master passed
+1 💚 checkstyle 0m 18s master passed
+1 💚 spotless 0m 44s branch has no errors when running spotless:check.
+1 💚 spotbugs 0m 58s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 11s Maven dependency ordering for patch
+1 💚 mvninstall 2m 53s the patch passed
+1 💚 compile 0m 51s the patch passed
+1 💚 javac 0m 51s the patch passed
-0 ⚠️ checkstyle 0m 10s hbase-mapreduce: The patch generated 1 new + 0 unchanged - 0 fixed = 1 total (was 0)
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 hadoopcheck 5m 31s Patch does not cause any errors with Hadoop 3.3.6.
-1 ❌ spotless 0m 37s patch has 24 errors when running spotless:check, run spotless:apply to fix.
+1 💚 spotbugs 1m 12s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 16s The patch does not generate ASF License warnings.
25m 39s
Subsystem Report/Notes
Docker ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #5795
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
uname Linux 3948ebceee70 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 6101bad
Default Java Eclipse Adoptium-11.0.17+8
checkstyle https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-general-check/output/diff-checkstyle-hbase-mapreduce.txt
spotless https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-general-check/output/patch-spotless.txt
Max. process+thread count 81 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/console
versions git=2.34.1 maven=3.8.6 spotbugs=4.7.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 32s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 16s Maven dependency ordering for branch
+1 💚 mvninstall 3m 15s master passed
+1 💚 compile 0m 36s master passed
+1 💚 shadedjars 5m 42s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 26s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 11s Maven dependency ordering for patch
+1 💚 mvninstall 3m 5s the patch passed
+1 💚 compile 0m 35s the patch passed
+1 💚 javac 0m 35s the patch passed
+1 💚 shadedjars 5m 38s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 25s the patch passed
_ Other Tests _
+1 💚 unit 13m 5s hbase-mapreduce in the patch passed.
+1 💚 unit 10m 5s hbase-backup in the patch passed.
45m 17s
Subsystem Report/Notes
Docker ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-jdk17-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux de7f3f51c592 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 6101bad
Default Java Eclipse Adoptium-17.0.10+7
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/testReport/
Max. process+thread count 3775 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/console
versions git=2.34.1 maven=3.8.6
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 29s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 14s Maven dependency ordering for branch
+1 💚 mvninstall 2m 58s master passed
+1 💚 compile 0m 34s master passed
+1 💚 shadedjars 5m 38s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 27s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for patch
+1 💚 mvninstall 2m 53s the patch passed
+1 💚 compile 0m 35s the patch passed
+1 💚 javac 0m 35s the patch passed
+1 💚 shadedjars 5m 39s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 25s the patch passed
_ Other Tests _
+1 💚 unit 14m 21s hbase-mapreduce in the patch passed.
+1 💚 unit 10m 38s hbase-backup in the patch passed.
46m 26s
Subsystem Report/Notes
Docker ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux a4536b1f2506 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 6101bad
Default Java Eclipse Adoptium-11.0.17+8
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/testReport/
Max. process+thread count 3583 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/console
versions git=2.34.1 maven=3.8.6
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 46s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for branch
+1 💚 mvninstall 3m 30s master passed
+1 💚 compile 0m 40s master passed
+1 💚 shadedjars 5m 20s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 28s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 13s Maven dependency ordering for patch
+1 💚 mvninstall 2m 59s the patch passed
+1 💚 compile 0m 40s the patch passed
+1 💚 javac 0m 40s the patch passed
+1 💚 shadedjars 5m 58s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 27s the patch passed
_ Other Tests _
+1 💚 unit 15m 6s hbase-mapreduce in the patch passed.
+1 💚 unit 11m 28s hbase-backup in the patch passed.
49m 11s
Subsystem Report/Notes
Docker ClientAPI=1.45 ServerAPI=1.45 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux 42dee04f1f59 5.4.0-174-generic #193-Ubuntu SMP Thu Mar 7 14:29:28 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 6101bad
Default Java Temurin-1.8.0_352-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/testReport/
Max. process+thread count 3340 (vs. ulimit of 30000)
modules C: hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/console
versions git=2.34.1 maven=3.8.6
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Ok so the problem here is that the Merge job sets the input dirs to table dirs:

backupIT/backup_1712319710829/default/table-false
backupIT/backup_1712319719106/default/table-false

Typically HFileInputFormat expects the input dirs to be region dirs like:

backupIT/backup_1712319710829/default/table-false/<regionname>
backupIT/backup_1712319719106/default/table-false/<regionname>
... etc, for each region in each table

In which case a region dir contains a column dir, and so it needed to handle that and does 1 level of "recursion".

But in the case of merge, the input dir is the table dir and it needs to do 2 levels of recursion.


I'm a little on the fence about whether this fix should be in HFileInputFormat or actually in MapReduceHFileSplitterJob. In the latter case we could list the backup dirs and add the regions within to the inputs, so that we honor the existing contract of HFileInputFormat.

That said I think for now I'm leaning towards this being the ok path, so we can leave it. There might be other benefits as well.

@@ -155,16 +154,23 @@ protected List<FileStatus> listStatus(JobContext job) throws IOException {
// since HFiles are written to directories where the
// directory name is the column name
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The comment here is out of date relative to the implementation now. It would be good to update it about the case where sometimes it might need to recurse further, such as when pointed at a table dir.

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Sure, I updated the comment to hint at both current cases for the input dirs: and (but without specifically mentioning MapReduceBackupMergeJob)

@bbeaudreault
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Also please run mvn spotless:apply -pl hbase-backups

@thomassngdata thomassngdata force-pushed the HBASE-28483_backup_merge_fails_bulkloaded_hfiles branch from a828ccf to 9714577 Compare April 6, 2024 09:43
@thomassngdata
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Issue with mvn spotless:apply -pl hbase-backup was a duplicate hamcrest-library dependency in hbase-replication/pom.xml, nothing to do with my PR but fixed it.

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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 30s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+0 🆗 mvndep 0m 12s Maven dependency ordering for branch
+1 💚 mvninstall 3m 11s master passed
+1 💚 compile 1m 7s master passed
+1 💚 checkstyle 0m 24s master passed
+1 💚 spotless 0m 43s branch has no errors when running spotless:check.
+1 💚 spotbugs 1m 14s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 11s Maven dependency ordering for patch
+1 💚 mvninstall 2m 58s the patch passed
+1 💚 compile 1m 5s the patch passed
+1 💚 javac 1m 5s the patch passed
+1 💚 checkstyle 0m 23s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 xml 0m 1s The patch has no ill-formed XML file.
+1 💚 hadoopcheck 5m 33s Patch does not cause any errors with Hadoop 3.3.6.
+1 💚 spotless 0m 41s patch has no errors when running spotless:check.
+1 💚 spotbugs 1m 37s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 22s The patch does not generate ASF License warnings.
27m 21s
Subsystem Report/Notes
Docker ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #5795
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile xml
uname Linux 02d087f44ccc 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / aea7e7c
Default Java Eclipse Adoptium-11.0.17+8
Max. process+thread count 81 (vs. ulimit of 30000)
modules C: hbase-replication hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/console
versions git=2.34.1 maven=3.8.6 spotbugs=4.7.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 30s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 17s Maven dependency ordering for branch
+1 💚 mvninstall 3m 16s master passed
+1 💚 compile 0m 48s master passed
+1 💚 shadedjars 5m 42s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 36s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 11s Maven dependency ordering for patch
+1 💚 mvninstall 2m 58s the patch passed
+1 💚 compile 0m 47s the patch passed
+1 💚 javac 0m 47s the patch passed
+1 💚 shadedjars 5m 39s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 35s the patch passed
_ Other Tests _
+1 💚 unit 0m 30s hbase-replication in the patch passed.
+1 💚 unit 13m 12s hbase-mapreduce in the patch passed.
+1 💚 unit 9m 55s hbase-backup in the patch passed.
46m 19s
Subsystem Report/Notes
Docker ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/artifact/yetus-jdk17-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux 2c9ac48f55e8 5.4.0-1103-aws #111~18.04.1-Ubuntu SMP Tue May 23 20:04:10 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / aea7e7c
Default Java Eclipse Adoptium-17.0.10+7
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/testReport/
Max. process+thread count 3609 (vs. ulimit of 30000)
modules C: hbase-replication hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/console
versions git=2.34.1 maven=3.8.6
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 39s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 12s Maven dependency ordering for branch
+1 💚 mvninstall 3m 6s master passed
+1 💚 compile 0m 53s master passed
+1 💚 shadedjars 5m 22s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 45s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for patch
+1 💚 mvninstall 2m 52s the patch passed
+1 💚 compile 0m 53s the patch passed
+1 💚 javac 0m 53s the patch passed
+1 💚 shadedjars 5m 14s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 43s the patch passed
_ Other Tests _
+1 💚 unit 0m 36s hbase-replication in the patch passed.
+1 💚 unit 15m 42s hbase-mapreduce in the patch passed.
+1 💚 unit 11m 0s hbase-backup in the patch passed.
49m 34s
Subsystem Report/Notes
Docker ClientAPI=1.45 ServerAPI=1.45 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux 60169d09119f 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:21:23 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / aea7e7c
Default Java Eclipse Adoptium-11.0.17+8
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/testReport/
Max. process+thread count 3370 (vs. ulimit of 30000)
modules C: hbase-replication hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/console
versions git=2.34.1 maven=3.8.6
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 36s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+0 🆗 mvndep 0m 12s Maven dependency ordering for branch
+1 💚 mvninstall 2m 36s master passed
+1 💚 compile 0m 49s master passed
+1 💚 shadedjars 5m 8s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 39s master passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for patch
+1 💚 mvninstall 2m 28s the patch passed
+1 💚 compile 0m 48s the patch passed
+1 💚 javac 0m 48s the patch passed
+1 💚 shadedjars 6m 14s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 39s the patch passed
_ Other Tests _
+1 💚 unit 0m 34s hbase-replication in the patch passed.
+1 💚 unit 16m 12s hbase-mapreduce in the patch passed.
+1 💚 unit 11m 29s hbase-backup in the patch passed.
49m 57s
Subsystem Report/Notes
Docker ClientAPI=1.45 ServerAPI=1.45 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #5795
Optional Tests javac javadoc unit shadedjars compile
uname Linux 47831bcf74d1 5.4.0-174-generic #193-Ubuntu SMP Thu Mar 7 14:29:28 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / aea7e7c
Default Java Temurin-1.8.0_352-b08
Test Results https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/testReport/
Max. process+thread count 3278 (vs. ulimit of 30000)
modules C: hbase-replication hbase-mapreduce hbase-backup U: .
Console output https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/2/console
versions git=2.34.1 maven=3.8.6
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@bbeaudreault
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What I was referring to about spotless was this error in the first build: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5795/1/artifact/yetus-general-check/output/patch-spotless.txt

Spotless helps maintain our formatting guidelines. Where did you see it complaining about the hamcrest dependency?

I see the formatting issues have been fixed, but I'm not sure we should change the pom.xml unless there was a reason

@bbeaudreault
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I investigated and it does seem like a true duplicate. I don't think this was related, but it's ok. More importantly, the spotless formatting issues have been fixed. Going to merge this

@bbeaudreault bbeaudreault merged commit 558b151 into apache:master Apr 6, 2024
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bbeaudreault pushed a commit that referenced this pull request Apr 6, 2024
bbeaudreault pushed a commit that referenced this pull request Apr 6, 2024
bbeaudreault pushed a commit that referenced this pull request Apr 6, 2024
bbeaudreault pushed a commit to HubSpot/hbase that referenced this pull request Apr 6, 2024
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