tests: use GitHub Actions for CI (landlab#1270)

* add github actions for ci

* remove appveyor config file

* add pyproject.toml

* fix syntax error

* reformat with black

* only run black on source dirs

* remove binnedlayers.py from version control

* remove setup_requires

* run black on everything

* remove old .ci folder

* install requirements as a separate step

* reformat files in docs, notebooks with black

* reformat versioneer.py with black

* install build-system explicitly

* install dependencies with conda

* add numpy as a requirement

* install a c compiler

* always build docs, for now

* fix syntax error

* install requirements with mamba

* drop python 3.9 builds

* install docs requirements with pip

* install landlab in editable mode

* fix pip install command

* remove linkcheck when building docs

* use shapeTypeName instead of shapeType

* remove notebook tests from testing step

* set shapeType, not shapeTypeName

* pop dbf keyword it is None

* add new badges, remove old ones

* remove unused import

* add github action for testing the notebooks

* update action names

* create temp notebook script in current directory

* fix for windows--use unique filename not tempfile

* remove stray notebook

.github/workflows/black.yml

@@ -0,0 +1,21 @@
+name: Black
+
+on: [push, pull_request]
+
+jobs:
+
+  lint:
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+      - uses: psf/black@stable
+        with:
+          black_args: ". --check"

.github/workflows/docs.yml

@@ -0,0 +1,59 @@
+name: Documentation
+
+on: [push, pull_request]
+# on:
+#     push:
+#         paths:
+#             - "docs/**"
+#             - "AUTHORS.rst"
+#             - "CHANGES.rst"
+#             - "CONTRIBUTING.rst"
+#             - "LICENSE.rst"
+#             - "README.rst"
+#     pull_request:
+#         paths:
+#             - "docs/**"
+#             - "AUTHORS.rst"
+#             - "CHANGES.rst"
+#             - "CONTRIBUTING.rst"
+#             - "LICENSE.rst"
+#             - "README.rst"
+
+jobs:
+    build:
+        # We want to run on external PRs, but not on our own internal PRs as they'll be run
+        # by the push to the branch. Without this if check, checks are duplicated since
+        # internal PRs match both the push and pull_request events.
+        if:
+          github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+          github.repository
+
+        runs-on: ubuntu-latest
+
+        defaults:
+          run:
+            shell: bash -l {0}
+
+        steps:
+          - uses: actions/checkout@v2
+          - uses: conda-incubator/setup-miniconda@v2
+            with:
+              auto-update-conda: true
+              python-version: 3.8
+              channels: conda-forge
+              channel-priority: true
+
+          - name: Show conda installation info
+            run: |
+              conda info
+              conda list
+    
+          - name: Install dependencies
+            run: |
+              conda install mamba
+              mamba install --file=requirements.txt
+              pip install -r requirements-docs.txt
+              pip install -e .
+
+          - name: Build documentation
+            run: make -C docs clean html

.github/workflows/flake8.yml

@@ -0,0 +1,26 @@
+name: Flake8
+
+on: [push, pull_request]
+
+jobs:
+
+  lint:
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Lint
+        run: |
+          pip install flake8
+          flake8 landlab tests

.github/workflows/test-notebooks.yml

@@ -0,0 +1,57 @@
+name: Notebooks
+
+on: [push, pull_request]
+
+jobs:
+  build-and-test:
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.6, 3.7, 3.8]
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+          channel-priority: true
+
+      - name: Show conda installation info
+        run: |
+          conda info
+          conda list
+
+      - name: Install requirements
+        run: |
+          conda install mamba
+          mamba install --file=requirements.txt
+          mamba list
+
+      - name: Build and install package
+        run: |
+          pip install -e .
+
+      - name: Install testing dependencies
+        run: mamba install --file=requirements-testing.txt -c conda-forge
+
+      - name: Test jupyter notebooks
+        run: |
+          python -c 'import landlab; print(landlab.__version__)'
+          pip install -r requirements-notebooks.txt
+          pytest notebooks --run-notebook -vvv

.github/workflows/test.yml

@@ -0,0 +1,60 @@
+ssame: Test
+
+on: [push, pull_request]
+
+jobs:
+  build-and-test:
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.6, 3.7, 3.8]
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+          channel-priority: true
+
+      - name: Show conda installation info
+        run: |
+          conda info
+          conda list
+
+      - name: Install requirements
+        run: |
+          conda install mamba
+          mamba install --file=requirements.txt
+          mamba list
+
+      - name: Build and install package
+        run: |
+          pip install -e .
+
+      - name: Install testing dependencies
+        run: mamba install --file=requirements-testing.txt
+
+      - name: Test
+        run: |
+          python -c 'import landlab; print(landlab.__version__)'
+          pytest --cov=landlab --cov-report=xml:$(pwd)/coverage.xml -vvv
+
+      - name: Coveralls
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.9'
+        uses: AndreMiras/coveralls-python-action@v20201129

README.rst

@@ -4,15 +4,17 @@
 .. image:: https://readthedocs.org/projects/landlab/badge/?version=latest
     :target: https://readthedocs.org/projects/landlab/?badge=latest
 
-.. image:: https://travis-ci.org/landlab/landlab.svg?branch=master
-    :target: https://travis-ci.org/landlab/landlab
+.. image:: https://github.com/landlab/landlab/workflows/Build/Test%20CI/badge.svg
+
+.. image:: https://github.com/landlab/landlab/workflows/Flake8/badge.svg
+
+.. image:: https://github.com/landlab/landlab/workflows/Black/badge.svg
+
+.. image:: https://github.com/landlab/landlab/workflows/Documentation/badge.svg
 
 .. image:: https://coveralls.io/repos/landlab/landlab/badge.png
     :target: https://coveralls.io/r/landlab/landlab
 
-.. image:: https://ci.appveyor.com/api/projects/status/6u0bj0pggxrmf7s1/branch/master?svg=true
-    :target: https://ci.appveyor.com/project/mcflugen/landlab/branch/master
-
 .. image:: https://landscape.io/github/landlab/landlab/master/landscape.svg
     :target: https://landscape.io/github/landlab/landlab/master