fix links to teaching and tutorial notebooks #76
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| name: Test | |
| on: | |
| - push | |
| - pull_request | |
| concurrency: | |
| group: ${{ github.ref }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-tag: | |
| # Run on external PRs, but not on internal PRs, to avoid duplicate runs | |
| if: | | |
| github.event_name == 'push' || | |
| github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ubuntu-latest | |
| outputs: | |
| publish_url: ${{ steps.check-publish.outputs.publish_url }} | |
| steps: | |
| - name: Check if this is a release/prerelease | |
| id: check-publish | |
| run: | | |
| tag_name="${GITHUB_REF#refs/tags/}" | |
| if [[ "$tag_name" =~ ^v[0-9]+\.[0-9]+\.[0-9]+[ab][0-9]+$ ]]; then | |
| publish_url="https://test.pypi.org/legacy/" | |
| elif [[ "$tag_name" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then | |
| publish_url="https://upload.pypi.org/legacy/" | |
| else | |
| publish_url="none" | |
| fi | |
| echo "publish_url=$publish_url" >> "$GITHUB_OUTPUT" | |
| echo "tag_name=$tag_name" | |
| echo "publish_url=$publish_url" | |
| build-sdist: | |
| name: Build source distribution | |
| needs: check-tag | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build sdist | |
| run: pipx run build --sdist | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-sdist | |
| path: ${{ github.workspace }}/dist/*.tar.gz | |
| # Until GA has native aarch64 runners, this step is extremely | |
| # slow so we run it as a separate job and hope if finishes | |
| # around the same time as everything else. | |
| build-aarch64: | |
| needs: check-tag | |
| name: Build aarch64 wheels on ${{ matrix.cibw-only }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - cibw-only: "cp310-manylinux_aarch64" | |
| os: "ubuntu-latest" | |
| - cibw-only: "cp311-manylinux_aarch64" | |
| os: "ubuntu-latest" | |
| - cibw-only: "cp312-manylinux_aarch64" | |
| os: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Use Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| # Needed to build aarch64 wheels | |
| - name: Set up QEMU | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: all | |
| - name: Print build identifiers | |
| run: | | |
| python -m pip install cibuildwheel | |
| python -m cibuildwheel --only ${{ matrix.cibw-only }} --print-build-identifiers | |
| - name: Build wheels | |
| if: ${{ startsWith(needs.check-tag.outputs.publish_url, 'http') }} | |
| uses: pypa/[email protected] | |
| with: | |
| only: ${{ matrix.cibw-only }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-wheels-${{ matrix.os }}-${{ matrix.cibw-only }} | |
| path: ${{ github.workspace }}/wheelhouse/*.whl | |
| if-no-files-found: ignore | |
| build-wheels: | |
| name: Build wheels on ${{ matrix.cibw-only }} | |
| needs: check-tag | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # Linux x86_64 | |
| - cibw-only: "cp310-manylinux_x86_64" | |
| os: "ubuntu-latest" | |
| - cibw-only: "cp311-manylinux_x86_64" | |
| os: "ubuntu-latest" | |
| - cibw-only: "cp312-manylinux_x86_64" | |
| os: "ubuntu-latest" | |
| # Mac x86_64 | |
| - cibw-only: "cp310-macosx_x86_64" | |
| os: "macos-13" | |
| - cibw-only: "cp311-macosx_x86_64" | |
| os: "macos-13" | |
| - cibw-only: "cp312-macosx_x86_64" | |
| os: "macos-13" | |
| # Mac arm64 | |
| - cibw-only: "cp310-macosx_arm64" | |
| os: "macos-14" | |
| - cibw-only: "cp311-macosx_arm64" | |
| os: "macos-14" | |
| - cibw-only: "cp312-macosx_arm64" | |
| os: "macos-14" | |
| # Windows 64bit | |
| - cibw-only: "cp310-win_amd64" | |
| os: "windows-latest" | |
| - cibw-only: "cp311-win_amd64" | |
| os: "windows-latest" | |
| - cibw-only: "cp312-win_amd64" | |
| os: "windows-latest" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Use Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Print build identifiers | |
| run: | | |
| python -m pip install cibuildwheel | |
| python -m cibuildwheel --only ${{ matrix.cibw-only }} --print-build-identifiers | |
| - name: Install openmp | |
| if: runner.os == 'macOS' | |
| run: | | |
| curl -O https://mac.r-project.org/openmp/openmp-13.0.0-darwin21-Release.tar.gz | |
| sudo tar fvxz openmp-13.0.0-darwin21-Release.tar.gz -C / | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| with: | |
| only: ${{ matrix.cibw-only }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-wheels-${{ matrix.os }}-${{ matrix.cibw-only }} | |
| path: ${{ github.workspace }}/wheelhouse/*.whl | |
| test-landlab: | |
| needs: build-wheels | |
| name: Run the tests | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| pytest-marker: ["slow", "not slow"] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| auto-update-conda: true | |
| - uses: actions/download-artifact@v4 | |
| name: Download build artifacts | |
| with: | |
| pattern: "build-*" | |
| merge-multiple: true | |
| path: ${{ github.workspace }}/dist | |
| - name: Test | |
| env: | |
| HYPOTHESIS_PROFILE: "ci" | |
| MPLBACKEND: "Agg" | |
| run: | | |
| pip install nox | |
| nox --verbose -s test \ | |
| --force-pythons=${{ matrix.python-version }} \ | |
| -- -m '${{ matrix.pytest-marker }}' --path=dist | |
| - name: Coveralls | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| flag-name: py${{ matrix.python-version }}-${{ matrix.os }}-${{ matrix.pytest-marker }} | |
| debug: true | |
| test-notebooks: | |
| needs: build-wheels | |
| name: Run the notebook tests | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest] | |
| python-version: ["3.12"] | |
| pytest-marker: ["slow", "not slow"] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| auto-update-conda: true | |
| - uses: actions/download-artifact@v4 | |
| name: Download build artifacts | |
| with: | |
| pattern: "build-*" | |
| merge-multiple: true | |
| path: ${{ github.workspace }}/dist | |
| - name: Test | |
| env: | |
| OPENTOPOGRAPHY_API_KEY: ${{ secrets.OPENTOPOGRAPHY_API_KEY }} | |
| MPLBACKEND: "module://matplotlib_inline.backend_inline" | |
| PYTEST_ADDOPTS: "--overwrite" | |
| run: | | |
| pip install matplotlib_inline | |
| pip install nox | |
| nox --verbose -s test-notebooks \ | |
| --force-pythons=${{ matrix.python-version }} \ | |
| -- -m '${{ matrix.pytest-marker }}' --path=dist | |
| - name: Find executed notebooks | |
| run: | | |
| for f in $(git diff --name-only); do | |
| mkdir -p executed/$(dirname $f); | |
| cp $f executed/$(dirname $f); | |
| done | |
| ls -R executed/ | |
| - name: Upload executed notebooks | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: notebooks-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.pytest-marker }} | |
| path: executed/ | |
| overwrite: true | |
| docs: | |
| needs: test-notebooks | |
| strategy: | |
| matrix: | |
| os: [macos-latest] | |
| python-version: ["3.12"] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| auto-update-conda: true | |
| - uses: actions/download-artifact@v4 | |
| name: Download build artifact | |
| with: | |
| pattern: notebooks-* | |
| merge-multiple: true | |
| - name: Display structure of downloaded files | |
| run: ls -R | |
| - name: install and check pandoc | |
| run: | | |
| conda install pandoc -c conda-forge | |
| pandoc --help | |
| pandoc --version | |
| - name: Build documentation | |
| run: | | |
| pip install nox | |
| pip install -r requirements/docs.txt | |
| nox -s docs-build --no-venv | |
| - name: Create zip | |
| run: zip -r docs.zip build/html | |
| - name: Upload docs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: docs.zip | |
| coveralls_finish: | |
| needs: test-landlab | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true | |
| debug: true | |
| publish: | |
| needs: | |
| - check-tag | |
| - test-landlab | |
| - test-notebooks | |
| - build-sdist | |
| - build-aarch64 | |
| name: "Publish to PyPI/TestPyPI" | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: "build-*" | |
| merge-multiple: true | |
| path: ${{ github.workspace }}/dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| if: ${{ startsWith(needs.check-tag.outputs.publish_url, 'http') }} | |
| with: | |
| repository-url: ${{ needs.check-tag.outputs.publish_url }} | |
| skip-existing: true | |
| print-hash: true | |
| verify-metadata: false |