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1. scMC scMC Public

   R package for integrating and comparing multiple single cell genomic datasets

   HTML 11 1

2. scAI scAI Public

   An unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles

   MATLAB 6 3

3. CSMF CSMF Public

   Simultaneously learning Common and Specific patterns via Matrix Factorization

   MATLAB

4. JMF JMF Public

   A general joint matrix factorization framework for data integration

   MATLAB

5. PBLR PBLR Public

   An effective tool for imputing scRNA-seq data

   MATLAB

6. DIRECT-NET DIRECT-NET Public

   Inferring CREs and constructing regulatory networks from single cell multi-omics data

   HTML