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Update EntityLinker docstring #472

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Apr 30, 2023
Merged

Update EntityLinker docstring #472

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Update EntityLinker docstring
andyjessen Mar 31, 2023
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Merge branch 'main' into fix-entitylinker-docstring
dakinggg Apr 30, 2023
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8 changes: 5 additions & 3 deletions scispacy/linking.py
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Expand Up @@ -12,10 +12,12 @@ class EntityLinker:
A spacy pipeline component which identifies entities in text which appear
in a knowledge base.

Currently, there are two defaults: the Unified Medical Language System (UMLS) and
the Medical Subject Headings (MESH) dictionary.
Currently, there are five defaults: the Unified Medical Language System (UMLS),
the Medical Subject Headings (MeSH) dictionary, the RxNorm ontology, the Gene
Ontology, and the Human Phenotype Ontology.

To use these configured default KBs, pass the `name` parameter, either 'umls' or 'mesh'.
To use these configured default KBs, pass the `name` parameter ('umls','mesh',
'rxnorm','go','hpo').

Currently this implementation just compares string similarity, returning
entities above a given threshold.
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