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Using napari to visualise cryo-electron tomography data programmatically

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Using napari with cryo-electron tomography data

This repo contains a quick demonstration of how to use napari to visualise cryo-electron tomography data.

napari window

This demo was given after a presentation at the MRC Laboratory of Molecular Biology tomography meeting on 29/04/22. Slides can be downloaded from zenodo.

Installation

Install into a fresh virtual environment, I personally use miniconda for environment management.

git clone https://github.com/alisterburt/napari-cryo-et-demo.git
cd napari-cryo-et-demo
pip install -r requirements.txt

Downloading example data

We will download example data from zenodo using zenodo_get which was installed in the previous step.

zenodo_get --output-dir hiv 6504891

Running

Run the demo script with

python visualise_particles_on_tomogram.py

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