This repo contains a quick demonstration of how to use napari to visualise cryo-electron tomography data.
This demo was given after a presentation at the MRC Laboratory of Molecular Biology tomography meeting on 29/04/22. Slides can be downloaded from zenodo.
Install into a fresh virtual environment, I personally use miniconda for environment management.
git clone https://github.com/alisterburt/napari-cryo-et-demo.git
cd napari-cryo-et-demo
pip install -r requirements.txt
We will download example data from zenodo using zenodo_get
which was installed in the previous step.
zenodo_get --output-dir hiv 6504891
Run the demo script with
python visualise_particles_on_tomogram.py