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Tw2

Multivariate Welch t-test on distances

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  1. code/ -- R source code for simulations, figure and table generation
  • Tw2.R -- implementation to Tw2, distance Cohen's d
  • simulateDists.R -- simulation of distance matrices with prescribed effect size and heteroscedasticity
  • simulateAll.R -- simulation of the main data set for the manuscript
  • simulate10.R -- simulation of data with sample sizes in the vicinity of 10 per group
  • simulate50.R -- simulation of data with sample sizes in the vicinity of 50 per group
  • heatmaps.R -- generation of figures and tables for main simulation study
  • plot10.R -- generation of figures and tables for simulation study with sample sizes in the vicinity of 10 per group
  • plot50.R -- generation of figures and tables for simulation study with sample sizes in the vicinity of 50 per group
  • STAT.R -- analysis of sub-therapeutic antibiotic treatment data
  • Psoriasis.R -- analysis of psoriasis skin microbiome data
  1. data.zip -- Data for applications
  • obesity_mapping.txt -- metadata for STAT dataset
  • seqs_otu_table.txt -- abundace table for STAT dataset
  • PsoriasisMetadata.txt -- metadata for psoriasis dataset
  • otu_table.txt -- abundace table for psoriasis dataset
  1. results/
  • simulation_results2.txt.zip -- main simulation results
  • simulation10_results.txt.zip -- simulation results for sample sizes in the vicinity of 10 per group
  • simulation50_results.txt.zip -- simulation results for sample sizes in the vicinity of 50 per group

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