Fixed MyPy errors in upgrade-to-1 PR

CHANGELOG.md

@@ -92,7 +92,7 @@ WARNING: 'jupyter_execute_notebooks' is deprecated for 'nb_execution_mode' [myst
 
 `nb_render_priority` has been removed and replaced by `nb_mime_priority_overrides`, which has a different format and is more flexible. See [Outputs MIME priority](docs/render/format_code_cells.md) for more information.
 
-As per the changes in [`myst_parser`](myst:develop/_changelog), the `dollarmath` syntax extension is no longer included by default.
+As per the changes in [`myst_parser`](inv:myst#develop/_changelog), the `dollarmath` syntax extension is no longer included by default.
 To re-add this extension, ensure that it is specified in your `conf.py`: `myst_enable_extensions = ["dollarmath"]`.
 
 For cell-level configuration the top-level key `render` has now been deprecated for `mystnb`.
@@ -168,7 +168,7 @@ See [Embedding outputs as variables](docs/render/glue.md) for more details.
   - `nbconvert`
 - Updated:
   - `Python`: `3.6+ -> 3.7+`
-  - `myst_parser`: [`0.15 -> 0.17`](myst:develop/_changelog)
+  - `myst_parser`: [`0.15 -> 0.17`](inv:myst#develop/_changelog)
   - `jupyter-cache`: [`0.4 -> 0.5`](https://github.com/executablebooks/jupyter-cache/blob/master/CHANGELOG.md)
   - `sphinx-togglebutton`: [`0.1 -> 0.3`](https://sphinx-togglebutton.readthedocs.io/en/latest/changelog.html)
 

docs/authoring/custom-formats.Rmd

@@ -21,7 +21,7 @@ nb_custom_formats = {
 ```
 
 - The string should be a Python function that will be loaded by `import mylibrary.converter_function`
-- The function should take a file's contents (as a `str`) and return an [nbformat.NotebookNode](nbformat:api)
+- The function should take a file's contents (as a `str`) and return an [nbformat.NotebookNode](inv:nbformat#api)
 
 If the function takes additional keyword arguments, then you can specify these as dictionary in a second argument.
 For example this is what the default conversion would look like:

docs/authoring/jupyter-notebooks.md

@@ -16,13 +16,13 @@ Sphinx using the MyST parser.[^download]
 
 :::{seealso}
 For more information about what you can write with MyST Markdown, see the
-[MyST Parser documentation](myst:intro/get-started).
+[MyST Parser documentation](inv:myst#intro/get-started).
 :::
 
 ### Configuration
 
-The MyST-NB parser derives from [the base MyST-Parser](myst:intro/get-started), and so all the same configuration options are available.
-See the [MyST configuration options](myst:sphinx/config-options) for the full set of options, and [MyST syntax guide](myst:syntax/core) for all the syntax options.
+The MyST-NB parser derives from [the base MyST-Parser](inv:myst#intro/get-started), and so all the same configuration options are available.
+See the [MyST configuration options](inv:myst#sphinx/config-options) for the full set of options, and [MyST syntax guide](inv:myst#syntax/core) for all the syntax options.
 
 To build documentation from this notebook, the following options are set:
 
@@ -38,7 +38,7 @@ myst_url_schemes = ("http", "https", "mailto")
 ```
 
 :::{note}
-Loading the `myst_nb` extension also activates the [`myst_parser`](myst:index) extension, for enabling the MyST flavour of Markdown.
+Loading the `myst_nb` extension also activates the [`myst_parser`](inv:myst#index) extension, for enabling the MyST flavour of Markdown.
 It is not required to add this explicitly in the list of `extensions`.
 :::
 
@@ -53,7 +53,7 @@ For example, here's the MyST-NB logo:
 
 ![myst-nb logo](../_static/logo-wide.svg)
 
-By adding `"html_image"` to the `myst_enable_extensions` list in the sphinx configuration ([see here](myst:syntax/images)), you can even add HTML `img` tags with attributes:
+By adding `"html_image"` to the `myst_enable_extensions` list in the sphinx configuration ([see here](inv:myst#syntax/images)), you can even add HTML `img` tags with attributes:
 
 ```html
 <img src="../_static/logo-wide.svg" alt="logo" width="200px" class="shadow mb-2">
@@ -66,7 +66,7 @@ For example, here's a note admonition block:
 
 :::::{note}
 **Wow**, a note!
-It was generated with this code ([as explained here](myst:syntax/admonitions)):
+It was generated with this code ([as explained here](inv:myst:std:label#syntax/admonitions)):
 
 ````md
 :::{note}
@@ -77,7 +77,7 @@ It was generated with this code ([as explained here](myst:syntax/admonitions)):
 :::::
 
 If you wish to use "bare" LaTeX equations, then you should add `"amsmath"` to the `myst_enable_extensions` list in the sphinx configuration.
-This is [explained here](myst:syntax/amsmath), and works as such:
+This is [explained here](inv:myst:std:label#syntax/amsmath), and works as such:
 
 ```latex
 \begin{equation}
@@ -110,7 +110,7 @@ $$e^{i\pi} + 1 = 0$$ (euler)
 Euler's identity, equation {math:numref}`euler`, was elected one of the
 most beautiful mathematical formulas.
 
-You can see the syntax used for this example [here in the MyST documentation](myst:syntax/math).
+You can see the syntax used for this example [here in the MyST documentation](inv:myst:std:label#syntax/math).
 
 ## Code cells and outputs
 

docs/index.md

@@ -86,7 +86,7 @@ Build single or collections of documents into multiple formats (HTML, PDF, ...).
 
 MyST-NB is a module within the [Executable Books Project](https://executablebooks.org),
 an international collaboration to build open source tools that facilitate publishing computational narratives using the Jupyter ecosystem.
-It is also a core component of [Jupyter Book](jb:intro).
+It is also a core component of [Jupyter Book](inv:jb#intro).
 
 Check out the [Gallery of Jupyter Books](https://executablebooks.org/en/latest/gallery),
 for inspiration from across the community.