Add an example of flox knockin design to the examples

akikuno · May 1, 2024 · 972c3e1 · 972c3e1
1 parent b0f4446
commit 972c3e1
Show file tree

Hide file tree

Showing 9 changed files with 5 additions and 1 deletion.
diff --git a/docs/RELEASE.md b/docs/RELEASE.md
@@ -49,7 +49,7 @@
 
 + Update `utils.input_validator` to ensure that SSL certificate verification does not fail, obtain the latest Certificate Authority (CA) certificates. [Commit Detail](https://github.com/akikuno/DAJIN2/commit/524a19577bb9a4aa9c4d0ce88d434f1dd5a6e679)
 
-<!-- TODO FLOXのExampleを追加して、E2Eテストに活かす！-->
++ Add an example of flox knockin design to the `examples`
 
 ## 🐛 Bug Fixes
 

diff --git a/examples/example_flox.tar.gz b/examples/example_flox.tar.gz
diff --git a/examples/example_flox/batch.xlsx b/examples/example_flox/batch.xlsx
diff --git a/examples/example_flox/cables2_flox.fa b/examples/example_flox/cables2_flox.fa
@@ -0,0 +1,4 @@
+>flox
+GGCAAGAACGACCTGCTTTTTACCTTACAGAACCAAGCATGCATCTGGATCACCAAGACACAAAGGCCTGAAGAAAACCCACTTCATCAAGAACATGAGGCAGTATGACACAAAGAACAGCAGGTGAGTGAGTGTAGGGCCAGGCCCGGGAAGGCCACTGTGCTCCCTGTACTGTAGGATCAGGCCGTGTCTCTGGGGGCCAAAAATATGAGACCCAGGCCCTGCCCCTGTTGGCAGCAGCCCCTTCTCCATCACCCGTTGTCCCCTGACCCTCTATATTGTTGAACACTGGCTAGCATAGCCAGGCCAGCAAGCCACCACTGTATAATCCCAGGGAAGAGCCACCAGCTGGACACAAATCTTAAGAAAAAGAGACTAGGCACCACTGTATAATCCCAGGGAAGGGCCAGCAGCTGGACACAGATCTTAAGAAAAAGAGACTAGGGAAAGCAAAAATGCCTCCCCCCTCCCCAAATGTGCCCAGGATAGAAGGTGCGACCATATTTGGGGCACATATACAGGATAAGGCATGGCTATACTTGTCAGCACTAAGAGTTCCATTGGGGACACACAGATGGAGATGAGGTATATTGGGGGACATATGGGAGGCTTAACTCAAACTAGTATTTGGGTCCCCAGAACAGTGCTAGGCTAGAATCTGGGCAGCTGCATATGCCTGCACTGGTGCAAACACACTACCTGTCACTCTGATCTCAGTCCCTTCCCTGCTGTAGGTCACCGTGATAAGTATCCCCAGGAACTGTTGCTGCAGGACCTGCAAATCCTAAGTCCTGAGACCACAGGGTGGCCTATGGTTATAGCTTTGAGCATTCAGGGGCCCCAGTCCTAAGCCCCCCTAGATAGCTTAGTTCTGTATTATATCTAGGTGTTCTCTATTAGCAGTAAACCTTGTGTTTGCCTGTACTCTGTAGCCTGTTGCCAATGAACTTGGCAGCTTCCTGTGCCCTCTCTTTGTGCGAATGAAGCTGCCCTTTCCTGGGTAACCTGTGCTCCTGGGAGCAGGGAGCTTCCTAAGCAGATCTAGGGAATCTGGCCCAAGTGCTAAGATGCCAGACCTGGCTTCCGGAATCCAAGTCCCCTTGGTGGCTCTGGCAGTTTCCCATCACCCAAATGTAGACAGGACAGAGTTCCTGCCCTGCTCTGACCTCGGCCTCCCACAGGATTGTACTCATCTGTGCCAAGCGGTCCCTGTGTGCGGCCTTCTCAGTCCTGCCCTATGGAGAAGGCCTACGGATCAGGTAAGAAACTGCCCATGCTGCGAACACGGGTAAGCCCTGGTCCTGCTGAGCACAATCAGTGTGGCCTGCTCTTGAGTGTAGGCTGGGGCCTTAGACTCATGGGGCCAGCATATCGTCTCCCTCCACAGCCCAGGAGTTTGCATTCCAGGTTCTTATCCCCGGAGCCACGGGTTCTGTCCAGACTATCTATATGTGTGTGGGATGTGTGTGTAGATGGATGGATAGATAGATAGGCAGGCTACATATAGGTTGGCTATATATAGGTTAGCTATATACAGGTATGTATCAGTAGGCTATATATAGGTTGACTGAGATATTCCTGAACCTCTCTCAAATAAGCTCCTAAAACCTTGTGACCAGCCCAGGCAATTGTGTCCTGAGTATAATTCAGGGAAGAAGGAAACAGCTGTTGGGGCGGGGCAGTGTTGTGTGTGACCCCACAGAACAATAGTCGGCACAGAAAAACCTCCTGTCaaacATAACTTCGTATAGCATACATTATACGAAGTTATggcgcgccCAGAGTGGGAGATAGCCAGTTCTCAGGATCCCAGGCCAGCTGCTGAACTGTGTGACTACAGGTGAAGGGACTGAGGCACCTGGGAAGCGAATTTAAGCCAAAGTCTGGTAAGTTTTCAGGGATGTTCCAGAGTGGTGGCTCCCAGGTGCTATGACAGATGACATCTATCCTGTCATCCACAAGGCAGGAGTTAAGATACAGGCTGCCCTCAGGCTAAACCTTCTGTCATGTACCTCCAAGGTCATGCCCGCCCCCTTCTCCTGTTTTGAGGACTTTGTGGCAGGAGCACTCTGTGTGGGTGGATTCCCGGTGGGCCGAGCACCCACCCACTGACCACAGACAGAGGGACTACAGCCCTCCCTCTCATATACATTGCAGTGACCTGAGGGTGGACAGCCAGAAGCAGAGGCACCCATCCGGCGGCGTTTCTGTTTCTTCTGAGATGGTCTTTGAATTGGAAGGCGTTGAGCTGGGAGCAGATGGAAAGGCAAGAGCCCTGTGGCCAGCCATTGGCCAGCAGAGTTAGGCAGACAGGTGCTGCACATTAAGGCACAGTATTGGGAGCAAGCCACACCCCGTTACACCTGTCACTAGCTGGCTCATGCCACCCAGAGAAAGTGCCTAAGAGTACACCATACACAGCCACTGcgcgccaattcgatatcaagctATAACTTCGTATAGCATACATTATACGAAGTTATgcggccCTAGCTGTGGGTAACCCAACTGCTCCCCTGGGTTCTCCACATAGAGCCTTGCTTCTGGACCAGTAAGTAGGCCAAGGGTCTTCCAAGACAGAGACTAGCCTGGCCACAGACCACAGATTAGGCATGGAAGCTAGTGCTCTGACCTTGAAAGTACCCACTCCGACTGGGTAGCAGCATGGCTTCAGGCTCCTCACTGGAGGGCAGAGGGAAGCAGAACTTGGTTGTACTTTCTGGCCTGGGGAGCAGAACTGAGCTAATGTGATTGCTTTTCCAGGTCGTGTCTTATGCAAAGTTCCTGTACCCTACTAATGCTCTGGTTATACACAAGAATGACAGCCATGGC
+>control
+GGCAAGAACGACCTGCTTTTTACCTTACAGAACCAAGCATGCATCTGGATCACCAAGACACAAAGGCCTGAAGAAAACCCACTTCATCAAGAACATGAGGCAGTATGACACAAAGAACAGCAGGTGAGTGAGTGTAGGGCCAGGCCCGGGAAGGCCACTGTGCTCCCTGTACTGTAGGATCAGGCCGTGTCTCTGGGGGCCAAAAATATGAGACCCAGGCCCTGCCCCTGTTGGCAGCAGCCCCTTCTCCATCACCCGTTGTCCCCTGACCCTCTATATTGTTGAACACTGGCTAGCATAGCCAGGCCAGCAAGCCACCACTGTATAATCCCAGGGAAGAGCCACCAGCTGGACACAAATCTTAAGAAAAAGAGACTAGGCACCACTGTATAATCCCAGGGAAGGGCCAGCAGCTGGACACAGATCTTAAGAAAAAGAGACTAGGGAAAGCAAAAATGCCTCCCCCCTCCCCAAATGTGCCCAGGATAGAAGGTGCGACCATATTTGGGGCACATATACAGGATAAGGCATGGCTATACTTGTCAGCACTAAGAGTTCCATTGGGGACACACAGATGGAGATGAGGTATATTGGGGGACATATGGGAGGCTTAACTCAAACTAGTATTTGGGTCCCCAGAACAGTGCTAGGCTAGAATCTGGGCAGCTGCATATGCCTGCACTGGTGCAAACACACTACCTGTCACTCTGATCTCAGTCCCTTCCCTGCTGTAGGTCACCGTGATAAGTATCCCCAGGAACTGTTGCTGCAGGACCTGCAAATCCTAAGTCCTGAGACCACAGGGTGGCCTATGGTTATAGCTTTGAGCATTCAGGGGCCCCAGTCCTAAGCCCCCCTAGATAGCTTAGTTCTGTATTATATCTAGGTGTTCTCTATTAGCAGTAAACCTTGTGTTTGCCTGTACTCTGTAGCCTGTTGCCAATGAACTTGGCAGCTTCCTGTGCCCTCTCTTTGTGCGAATGAAGCTGCCCTTTCCTGGGTAACCTGTGCTCCTGGGAGCAGGGAGCTTCCTAAGCAGATCTAGGGAATCTGGCCCAAGTGCTAAGATGCCAGACCTGGCTTCCGGAATCCAAGTCCCCTTGGTGGCTCTGGCAGTTTCCCATCACCCAAATGTAGACAGGACAGAGTTCCTGCCCTGCTCTGACCTCGGCCTCCCACAGGATTGTACTCATCTGTGCCAAGCGGTCCCTGTGTGCGGCCTTCTCAGTCCTGCCCTATGGAGAAGGCCTACGGATCAGGTAAGAAACTGCCCATGCTGCGAACACGGGTAAGCCCTGGTCCTGCTGAGCACAATCAGTGTGGCCTGCTCTTGAGTGTAGGCTGGGGCCTTAGACTCATGGGGCCAGCATATCGTCTCCCTCCACAGCCCAGGAGTTTGCATTCCAGGTTCTTATCCCCGGAGCCACGGGTTCTGTCCAGACTATCTATATGTGTGTGGGATGTGTGTGTAGATGGATGGATAGATAGATAGGCAGGCTACATATAGGTTGGCTATATATAGGTTAGCTATATACAGGTATGTATCAGTAGGCTATATATAGGTTGACTGAGATATTCCTGAACCTCTCTCAAATAAGCTCCTAAAACCTTGTGACCAGCCCAGGCAATTGTGTCCTGAGTATAATTCAGGGAAGAAGGAAACAGCTGTTGGGGCGGGGCAGTGTTGTGTGTGACCCCACAGAACAATAGTCGGCACAGAAAAACCTCCTGTCCAGAGTGGGAGATAGCCAGTTCTCAGGATCCCAGGCCAGCTGCTGAACTGTGTGACTACAGGTGAAGGGACTGAGGCACCTGGGAAGCGAATTTAAGCCAAAGTCTGGTAAGTTTTCAGGGATGTTCCAGAGTGGTGGCTCCCAGGTGCTATGACAGATGACATCTATCCTGTCATCCACAAGGCAGGAGTTAAGATACAGGCTGCCCTCAGGCTAAACCTTCTGTCATGTACCTCCAAGGTCATGCCCGCCCCCTTCTCCTGTTTTGAGGACTTTGTGGCAGGAGCACTCTGTGTGGGTGGATTCCCGGTGGGCCGAGCACCCACCCACTGACCACAGACAGAGGGACTACAGCCCTCCCTCTCATATACATTGCAGTGACCTGAGGGTGGACAGCCAGAAGCAGAGGCACCCATCCGGCGGCGTTTCTGTTTCTTCTGAGATGGTCTTTGAATTGGAAGGCGTTGAGCTGGGAGCAGATGGAAAGGCAAGAGCCCTGTGGCCAGCCATTGGCCAGCAGAGTTAGGCAGACAGGTGCTGCACATTAAGGCACAGTATTGGGAGCAAGCCACACCCCGTTACACCTGTCACTAGCTGGCTCATGCCACCCAGAGAAAGTGCCTAAGAGTACACCATACACAGCCACTGCTAGCTGTGGGTAACCCAACTGCTCCCCTGGGTTCTCCACATAGAGCCTTGCTTCTGGACCAGTAAGTAGGCCAAGGGTCTTCCAAGACAGAGACTAGCCTGGCCACAGACCACAGATTAGGCATGGAAGCTAGTGCTCTGACCTTGAAAGTACCCACTCCGACTGGGTAGCAGCATGGCTTCAGGCTCCTCACTGGAGGGCAGAGGGAAGCAGAACTTGGTTGTACTTTCTGGCCTGGGGAGCAGAACTGAGCTAATGTGATTGCTTTTCCAGGTCGTGTCTTATGCAAAGTTCCTGTACCCTACTAATGCTCTGGTTATACACAAGAATGACAGCCATGGC
diff --git a/examples/example_flox/control/barcode42.fq.gz b/examples/example_flox/control/barcode42.fq.gz
diff --git a/examples/example_flox/flox-1nt-deletion/barcode33.fq.gz b/examples/example_flox/flox-1nt-deletion/barcode33.fq.gz
diff --git a/examples/example_flox/flox-1nt-insertion/barcode34.fq.gz b/examples/example_flox/flox-1nt-insertion/barcode34.fq.gz
diff --git a/examples/example_flox/flox-1nt-substitution/barcode32.fq.gz b/examples/example_flox/flox-1nt-substitution/barcode32.fq.gz
diff --git a/examples/example_flox/flox/barcode31.fq.gz b/examples/example_flox/flox/barcode31.fq.gz