Skip to content

Commit

Permalink
Changed format from png to jpg
Browse files Browse the repository at this point in the history
  • Loading branch information
ajinkya-kulkarni committed Mar 15, 2023
1 parent 87dda2c commit 66feb4b
Show file tree
Hide file tree
Showing 6 changed files with 3 additions and 5 deletions.
4 changes: 1 addition & 3 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -1,4 +1,2 @@

.DS_Store
.ipynb_checkpoints/Example-checkpoint.ipynb
pip_files.txt
.ipynb_checkpoints/Example-checkpoint.ipynb
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,9 @@

This is primarily a [web application](https://pyspatialhistologyinformation.streamlit.app/) for analyzing H&E images using the PySpatialHistologyAnalysis package, which utilizes the [StarDist](https://github.com/stardist/stardist) and the [PySAL](https://pysal.org/) packages under it's hood. The app allows the user to upload an H&E image, and it performs object (nuclei) detection on the image using the StarDist2D model. The detected objects are then highlighted and displayed alongside the original image. Spatial analysis is then performed on the detected nuclei, and finally a spreadsheet of all the results is prepared.

![App Screenshots](https://github.com/ajinkya-kulkarni/PySpatialHistologyAnalysis/blob/main/screenshot1.png)
![App Screenshots](https://github.com/ajinkya-kulkarni/PySpatialHistologyAnalysis/blob/main/screenshot1.jpg)

![App Screenshots](https://github.com/ajinkya-kulkarni/PySpatialHistologyAnalysis/blob/main/screenshot2.png)
![App Screenshots](https://github.com/ajinkya-kulkarni/PySpatialHistologyAnalysis/blob/main/screenshot2.jpg)

#### Dependencies

Expand Down
Binary file added screenshot1.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file removed screenshot1.png
Binary file not shown.
Binary file added screenshot2.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file removed screenshot2.png
Binary file not shown.

0 comments on commit 66feb4b

Please sign in to comment.