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@artic-network @polio-nanopore @WildAnimalClocks @cov-lineages

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  1. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 430 106

  2. snipit snipit Public

    snipit: summarise snps relative to your reference sequence

    Python 150 28

  3. artic-network/civet artic-network/civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 49 14

  4. artic-network/polecat artic-network/polecat Public

    Python 9 1

  5. polio-nanopore/piranha polio-nanopore/piranha Public

    Python 18 4

  6. WildAnimalClocks/apollo WildAnimalClocks/apollo Public

    Predicted Epigenetic Age Clock

    Python 2