add pbs yml #53
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| name: Install OpenPBS | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| install_openpbs: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y gcc make libtool libhwloc-dev libx11-dev libxt-dev libedit-dev libical-dev ncurses-dev perl tcl-dev tk-dev swig libexpat-dev libssl-dev libxext-dev libxft-dev autoconf automake expat libedit2 sendmail-bin sudo tcl tk mlocate python-dev python3-dev libpython3.8-dev | |
| - name: Install PostgreSQL | |
| run: | | |
| sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list' | |
| wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | sudo apt-key add - | |
| sudo apt-get update | |
| sudo apt-get -y install postgresql | |
| - name: Install PostgreSQL Dependencies | |
| run: | | |
| sudo apt-get install -y postgresql-server-dev-all postgresql-contrib | |
| - name: Install dependencies | |
| run: | | |
| pip install -e ".[test,psij]" | |
| - name: Download and Install OpenPBS | |
| run: | | |
| python -V | |
| export LDFLAGS="-Wl,--copy-dt-needed-entries" | |
| C_INCLUDE_PATH="/usr/include/python3.8/:$PATH" | |
| export C_INCLUDE_PATH | |
| CPLUS_INCLUDE_PATH="/usr/include/python3.8/:$PATH" | |
| export CPLUS_INCLUDE_PATH | |
| mkdir -p ~/Downloads | |
| cd ~/Downloads/ | |
| sudo wget https://github.com/openpbs/openpbs/archive/refs/tags/v23.06.06.tar.gz | |
| tar -xpvf v23.06.06.tar.gz | |
| cd openpbs-23.06.06/ | |
| ./autogen.sh | |
| ./configure --prefix=/opt/pbs | |
| make | |
| sudo make install | |
| sudo /opt/pbs/libexec/pbs_postinstall | |
| sudo chmod 4755 /opt/pbs/sbin/pbs_iff /opt/pbs/sbin/pbs_rcp | |
| sudo /etc/init.d/pbs start | |
| . /etc/profile.d/pbs.sh | |
| qstat -B | |
| pytest -v --psij=pbspro pydra/engine --cov pydra --cov-config .coveragerc --cov-report xml:cov.xml | |
| - name: Test OpenPBS | |
| run: | | |
| qstat -B | |
| echo "sleep 60" | qsub | |
| qstat -a |