Remove some broken URLS

adeverse · Jan 15, 2024 · 954359b · 954359b
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Showing 3 changed files with 3 additions and 6 deletions.
diff --git a/man/apis108.Rd b/man/apis108.Rd
@@ -11,8 +11,6 @@ A data frame containing 180 rows (allelic forms on 8 loci) and 10 columns (popul
 Nimba, Celinda, Pretoria, Chalkidiki, Forli, Valenciennes, Umea and Seville).
 } 
 \source{
-\url{https://www1.montpellier.inra.fr/URLB/apis/libanfreq.pdf}\cr
-
 Franck P., Garnery L., Solignac M. and Cornuet J.M. (2000) Molecular confirmation of a fourth lineage in honeybees from the Near-East. 
 \emph{Apidologie}, \bold{31}, 167--180.
 }

diff --git a/man/newick.eg.Rd b/man/newick.eg.Rd
@@ -10,8 +10,7 @@ This data set contains various exemples of phylogenetic trees in Newick format.
 \code{newick.eg} is a list containing 14 character strings in Newick format. 
 }
 \source{
-Trees 1 to 7 were obtained from the URL \cr 
-\url{http://evolution.genetics.washington.edu/phylip/newicktree.html}. 
+Trees 1 to 7 were obtained from the phylip software. 
 
 Trees 8 and 9 were obtained by Clémentine Carpentier-Gimaret. 
 

diff --git a/man/newick2phylog.Rd b/man/newick2phylog.Rd
@@ -15,8 +15,8 @@ taxo2phylog(taxo, add.tools = FALSE, root="Root", abbrev=TRUE)
 newick2phylog.addtools(res, tol = 1e-07)
 }
 \arguments{
-  \item{x.tre}{a character string corresponding to a phylogenetic tree in Newick format\cr
-   (\url{http://evolution.genetics.washington.edu/phylip/newicktree.html})}
+  \item{x.tre}{a character string corresponding to a phylogenetic tree in Newick format
+   (see the phylip software)}
   \item{add.tools}{if TRUE, executes the function \code{newick2phylog.addtools}}
   \item{call}{call}
   \item{hc}{an object of class \code{hclust}}