Arabidopsis

Circadian XR-seq analysis in Arabidopsis

Dependencies:

• bowtie
• bowtie2
• bedtools
• pybedtools

Genomic files should be prepared and their locations should be defined in the referenceGenomePath.py

cd sancarlab_utils/projects/plant

# To run the first sample:
python pipeline.py run -n 1

# OR in slurm cluster:
python pipeline_array -g 0