brew update && brew upgrade fails on macOS with mongodb-community related-error

[traversaro]

Description

brew update followed by brew upgrade on macOS images, with the following error:

2021-07-15T10:12:27.6870860Z �[32m==>�[0m �[1mUpgrading �[32mmongodb/brew/mongodb-community�[39m
2021-07-15T10:12:27.6871920Z   4.4.5 -> 5.0.0 
2021-07-15T10:12:27.6872540Z �[0m
2021-07-15T10:12:27.9862780Z �[34m==>�[0m �[1mDownloading https://fastdl.mongodb.org/osx/mongodb-macos-x86_64-5.0.0.tgz�[0m
2021-07-15T10:12:34.5219070Z �[31mError:�[0m The `brew link` step did not complete successfully
2021-07-15T10:12:34.5219790Z The formula built, but is not symlinked into /usr/local
2021-07-15T10:12:34.5227910Z Could not symlink bin/install_compass
2021-07-15T10:12:34.5228520Z Target /usr/local/bin/install_compass
2021-07-15T10:12:34.5229730Z is a symlink belonging to mongodb-community. You can unlink it:
2021-07-15T10:12:34.5230780Z   brew unlink mongodb-community
2021-07-15T10:12:34.5231120Z 
2021-07-15T10:12:34.5231570Z To force the link and overwrite all conflicting files:
2021-07-15T10:12:34.5232530Z   brew link --overwrite mongodb-community
2021-07-15T10:12:34.5232910Z 
2021-07-15T10:12:34.5233300Z To list all files that would be deleted:
2021-07-15T10:12:34.5234240Z   brew link --overwrite --dry-run mongodb-community
2021-07-15T10:12:34.5234650Z 
2021-07-15T10:12:34.5235040Z Possible conflicting files are:
2021-07-15T10:12:34.5238090Z /usr/local/bin/install_compass -> /usr/local/opt/mongodb-community/bin/install_compass
2021-07-15T10:12:34.5246830Z /usr/local/bin/mongo -> /usr/local/opt/mongodb-community/bin/mongo
2021-07-15T10:12:34.5257030Z /usr/local/bin/mongod -> /usr/local/opt/mongodb-community/bin/mongod
2021-07-15T10:12:34.5265000Z /usr/local/bin/mongos -> /usr/local/opt/mongodb-community/bin/mongos
2021-07-15T10:12:37.3039560Z �[34m==>�[0m �[1mCaveats�[0m
2021-07-15T10:12:37.3040710Z To have launchd start mongodb/brew/mongodb-community now and restart at login:
2021-07-15T10:12:37.3041880Z   brew services start mongodb/brew/mongodb-community
2021-07-15T10:12:37.3042920Z Or, if you don't want/need a background service you can just run:
2021-07-15T10:12:37.3043850Z   mongod --config /usr/local/etc/mongod.conf
2021-07-15T10:12:37.3044650Z �[34m==>�[0m �[1mSummary�[0m
2021-07-15T10:12:37.3060200Z 🍺  /usr/local/Cellar/mongodb-community/5.0.0: 11 files, 179.9MB, built in 6 seconds
2021-07-15T10:12:37.3107180Z Removing: /usr/local/Cellar/mongodb-community/4.4.5... (11 files, 157.3MB)
2021-07-15T10:12:37.3368930Z Removing: /Users/runner/Library/Caches/Homebrew/mongodb-community--4.4.5.tgz... (57.1MB)

Virtual environments affected

• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• macOS 10.15
• macOS 11
• Windows Server 2016
• Windows Server 2019

Image version and build link

Failed build: https://github.com/traversaro/github-actions-brew-update-upgrade-check/actions/runs/1033479477 .

Is it regression?

Yes.

Expected behavior

Link of successful build: https://github.com/traversaro/github-actions-brew-update-upgrade-check/actions/runs/970042378 .

brew update and brew upgrade both return success.

Actual behavior

See

2021-07-15T10:12:27.6870860Z �[32m==>�[0m �[1mUpgrading �[32mmongodb/brew/mongodb-community�[39m
2021-07-15T10:12:27.6871920Z   4.4.5 -> 5.0.0 
2021-07-15T10:12:27.6872540Z �[0m
2021-07-15T10:12:27.9862780Z �[34m==>�[0m �[1mDownloading https://fastdl.mongodb.org/osx/mongodb-macos-x86_64-5.0.0.tgz�[0m
2021-07-15T10:12:34.5219070Z �[31mError:�[0m The `brew link` step did not complete successfully
2021-07-15T10:12:34.5219790Z The formula built, but is not symlinked into /usr/local
2021-07-15T10:12:34.5227910Z Could not symlink bin/install_compass
2021-07-15T10:12:34.5228520Z Target /usr/local/bin/install_compass
2021-07-15T10:12:34.5229730Z is a symlink belonging to mongodb-community. You can unlink it:
2021-07-15T10:12:34.5230780Z   brew unlink mongodb-community
2021-07-15T10:12:34.5231120Z 
2021-07-15T10:12:34.5231570Z To force the link and overwrite all conflicting files:
2021-07-15T10:12:34.5232530Z   brew link --overwrite mongodb-community
2021-07-15T10:12:34.5232910Z 
2021-07-15T10:12:34.5233300Z To list all files that would be deleted:
2021-07-15T10:12:34.5234240Z   brew link --overwrite --dry-run mongodb-community
2021-07-15T10:12:34.5234650Z 
2021-07-15T10:12:34.5235040Z Possible conflicting files are:
2021-07-15T10:12:34.5238090Z /usr/local/bin/install_compass -> /usr/local/opt/mongodb-community/bin/install_compass
2021-07-15T10:12:34.5246830Z /usr/local/bin/mongo -> /usr/local/opt/mongodb-community/bin/mongo
2021-07-15T10:12:34.5257030Z /usr/local/bin/mongod -> /usr/local/opt/mongodb-community/bin/mongod
2021-07-15T10:12:34.5265000Z /usr/local/bin/mongos -> /usr/local/opt/mongodb-community/bin/mongos
2021-07-15T10:12:37.3039560Z �[34m==>�[0m �[1mCaveats�[0m
2021-07-15T10:12:37.3040710Z To have launchd start mongodb/brew/mongodb-community now and restart at login:
2021-07-15T10:12:37.3041880Z   brew services start mongodb/brew/mongodb-community
2021-07-15T10:12:37.3042920Z Or, if you don't want/need a background service you can just run:
2021-07-15T10:12:37.3043850Z   mongod --config /usr/local/etc/mongod.conf
2021-07-15T10:12:37.3044650Z �[34m==>�[0m �[1mSummary�[0m
2021-07-15T10:12:37.3060200Z 🍺  /usr/local/Cellar/mongodb-community/5.0.0: 11 files, 179.9MB, built in 6 seconds
2021-07-15T10:12:37.3107180Z Removing: /usr/local/Cellar/mongodb-community/4.4.5... (11 files, 157.3MB)
2021-07-15T10:12:37.3368930Z Removing: /Users/runner/Library/Caches/Homebrew/mongodb-community--4.4.5.tgz... (57.1MB)

Repro steps

See https://github.com/traversaro/github-actions-brew-update-upgrade-check/blob/main/.github/workflows/brew-update.yml .

[al-cheb]

Hi, @traversaro!
We will take a look at this.

[traversaro]

Thanks @al-cheb ! In the meanwhile, I am testing the brew remove mongodb-community workaround in robotology/robotology-superbuild#827, I will update this issue with the outcome.

[traversaro]

Thanks @al-cheb ! In the meanwhile, I am testing the brew remove mongodb-community workaround in robotology/robotology-superbuild#827, I will update this issue with the outcome.

brew remove mongodb-community before running brew update && brew upgrade indeed proved to be a successful workaround: robotology/robotology-superbuild#827 .

[miketimofeev]

@traversaro the new image version doesn't have the issue. It will be deployed tomorrow.

[traversaro]

@traversaro the new image version doesn't have the issue. It will be deployed tomorrow.

Thanks a lot @miketimofeev !

[miketimofeev]

@traversaro just checked both deployed macos-10.15 and 11 — everything looks good.
I'm going to close the issue. Please feel free to contact us if you have any concerns.
Thank you!

[traversaro]

Indeed, it is working fine now, see https://github.com/traversaro/github-actions-brew-update-upgrade-check/actions/runs/1048745388 . Thanks a lot!