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In trying to solve #842, I thought I was being very clever by trying to run features-imports before database updates. But then I realized that this will cause nasty problems. I just thought I should document the reason here in case someone tries to get "smart" like me again in the future.
Basically, you should always run database updates before feature reverts or config imports. For instance, you might add a dependency on a new module to an existing config file. If that module isn't already installed before you try to import the config file, the import will fail. The only way to prevent this is to enable the module first via an update hook.