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Antigenic Cartography

The Centre for Pathogen Evolution, Department of Zoology, University of Cambridge, UK

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  1. slurm-pipeline slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    Python 58 12

  2. Racmacs Racmacs Public

    Racmacs R package for performing antigenic cartography

    JavaScript 20 9

  3. beast2-xml beast2-xml Public

    Python code to generate BEAST2 XML files

    Python 18 5

  4. dark-matter dark-matter Public

    Virus discovery

    Python 14 7

  5. figtree-recolor figtree-recolor Public

    A script to re-color a FigTree saved Nexus file

    Python 12 6

  6. ncbi-taxonomy-database ncbi-taxonomy-database Public

    How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

    Shell 7 2

Repositories

Showing 10 of 100 repositories
  • roessler_netzl_et_al2024 Public

    Code repository for the non-human primate antigenic cartography manuscript by Rössler, Netzl, et al. 2024

    acorg/roessler_netzl_et_al2024’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 25, 2024
  • beast2-xml Public

    Python code to generate BEAST2 XML files

    acorg/beast2-xml’s past year of commit activity
    Python 18 MIT 5 5 0 Updated Nov 21, 2024
  • dark-matter Public

    Virus discovery

    acorg/dark-matter’s past year of commit activity
    Python 14 MIT 7 38 2 Updated Nov 18, 2024
  • acmacs-build Public
    acorg/acmacs-build’s past year of commit activity
    Makefile 2 MIT 0 0 0 Updated Nov 5, 2024
  • netzl_et_al2024 Public
    acorg/netzl_et_al2024’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    acorg/slurm-pipeline’s past year of commit activity
    Python 58 MIT 12 2 0 Updated Oct 26, 2024
  • ncbi-taxonomy-database Public

    How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

    acorg/ncbi-taxonomy-database’s past year of commit activity
    Shell 7 MIT 2 1 0 Updated Oct 11, 2024
  • seqdb-3 Public

    Set of tools to build and query sequence database v3

    acorg/seqdb-3’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-virus Public

    Modules to handle virus and influenza related stuff, e.g. virus names, passages, reassortant information

    acorg/acmacs-virus’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-map-draw Public

    Drawing antigenic maps

    acorg/acmacs-map-draw’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
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