Maker: add an option to warn users about license (as asked by authors…

… in galaxyproject/iwc#47 (comment))
abretaud · Feb 8, 2022 · 4bdfa9a · 4bdfa9a
1 parent 42a0483
commit 4bdfa9a
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Showing 2 changed files with 16 additions and 1 deletion.
diff --git a/tools/maker/macros.xml b/tools/maker/macros.xml
@@ -7,7 +7,7 @@
         </requirements>
     </xml>
     <token name="@VERSION@">2.31.11</token>
-    <token name="@SUFFIX_VERSION@">1</token>
+    <token name="@SUFFIX_VERSION@">2</token>
 
     <xml name="citations">
         <citations>

diff --git a/tools/maker/maker.xml b/tools/maker/maker.xml
@@ -245,6 +245,12 @@ TMP= # specify a directory other than the system default temporary directory for
     </configfiles>
 
     <inputs>
+        <!-- More info on licensing in https://github.com/galaxyproject/iwc/pull/47#issuecomment-962260646 -->
+        <param name="license_agreement" type="boolean" label="Are you running Maker for academic use, or did you purchase a license?"
+            help="The MAKER authors specifically allowed to make it available on Galaxy. MAKER is free for academic use, but commercial Galaxy users of MAKER still need a license, which can be obtained at http://weatherby.genetics.utah.edu/cgi-bin/registration/maker_license.cgi">
+            <validator type="expression" message="You must either run Maker for academic use, or purchase a license.">True == value</validator>
+        </param>
+
         <param name="genome" type="data" format="fasta" label="Genome to annotate"/>
         <param name="organism_type" type="select" label="Organism type">
             <option value="eukaryotic">Eukaryotic</option>
@@ -492,6 +498,7 @@ TMP= # specify a directory other than the system default temporary directory for
     </outputs>
     <tests>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="est_evidences|est" value="est.fasta"/>
             <param name="est_evidences|est2genome" value="1"/>
@@ -500,6 +507,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="organism_type" value="prokaryotic"/>
             <param name="est_evidences|est" value="est.fasta"/>
@@ -509,6 +517,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_proc.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="reannotation|reannotate" value="yes"/>
             <param name="reannotation|maker_gff" value="evidences.gff3"/>
@@ -519,6 +528,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_reuse.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="abinitio_gene_prediction|snaphmm" value="snap.hmm"/>
             <param name="abinitio_gene_prediction|aug_prediction|augustus_mode" value="builtin"/>
@@ -530,6 +540,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_human.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="abinitio_gene_prediction|snaphmm" value="snap.hmm"/>
             <param name="abinitio_gene_prediction|aug_prediction|augustus_mode" value="history"/>
@@ -541,6 +552,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_model.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="est_evidences|est" value="est.fasta"/>
             <param name="est_evidences|est2genome" value="1"/>
@@ -549,6 +561,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_norm.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="est_evidences|est" value="est.fasta"/>
             <param name="est_evidences|est2genome" value="1"/>
@@ -558,6 +571,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_norm.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="est_evidences|est" value="est.fasta"/>
             <param name="est_evidences|est2genome" value="1"/>
@@ -568,6 +582,7 @@ TMP= # specify a directory other than the system default temporary directory for
             <output name="output_evidences" file="evidences_norm_dfam_up.gff3" compare="sim_size"/>
         </test>
         <test>
+            <param name="license_agreement" value="true" />
             <param name="genome" value="genome.fasta"/>
             <param name="est_evidences|est" value="non_IUPAC.fasta"/>
             <param name="est_evidences|est2genome" value="1"/>