Bump the production-dependencies group with 4 updates

Bumps the production-dependencies group with 4 updates: [scipy](https://github.com/scipy/scipy), [shapely](https://github.com/shapely/shapely), [matplotlib](https://github.com/matplotlib/matplotlib) and [pyside6](https://pyside.org).


Updates `scipy` from 1.12.0 to 1.13.0
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.12.0...v1.13.0)

Updates `shapely` from 2.0.3 to 2.0.4
- [Release notes](https://github.com/shapely/shapely/releases)
- [Changelog](https://github.com/shapely/shapely/blob/main/CHANGES.txt)
- [Commits](shapely/shapely@2.0.3...2.0.4)

Updates `matplotlib` from 3.8.3 to 3.8.4
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.8.3...v3.8.4)

Updates `pyside6` from 6.6.1 to 6.7.0

---
updated-dependencies:
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-dependencies
- dependency-name: shapely
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: matplotlib
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: pyside6
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>