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Add MoLFormer model to DeepChem (#4145) #7

Add MoLFormer model to DeepChem (#4145)

Add MoLFormer model to DeepChem (#4145) #7

Triggered via push October 25, 2024 15:08
Status Failure
Total duration 2h 12m 30s
Artifacts

test.yml

on: push
Matrix: core-build
Matrix: unit-tests
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8 errors and 14 warnings
unit-tests (ubuntu-latest, 3.11)
The process '/home/runner/miniconda3/condabin/conda' failed with exit code 1
unit-tests (ubuntu-latest, 3.11)
Process completed with exit code 127.
unit-tests (windows-latest, 3.9)
The process 'C:\Users\runneradmin\miniconda3\condabin\conda.bat' failed with exit code 1
unit-tests (windows-latest, 3.9)
Process completed with exit code 127.
unit-tests (ubuntu-latest, 3.10)
Process completed with exit code 1.
unit-tests (ubuntu-latest, 3.10)
Process completed with exit code 1.
unit-tests (ubuntu-latest, 3.8)
Process completed with exit code 1.
unit-tests (ubuntu-latest, 3.8)
Process completed with exit code 1.
unit-tests (ubuntu-latest, 3.11)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
unit-tests (ubuntu-latest, 3.11)
Pip subprocess error: Running command git clone --filter=blob:none --quiet https://github.com/diffqc/dqclibs.git /tmp/pip-req-build-jvjvjghe Running command git clone --filter=blob:none --quiet https://github.com/hackingmaterials/matminer.git /tmp/pip-req-build-b2r7nlvo Running command git clone --filter=blob:none --quiet https://gitlab.com/libxc/libxc.git /tmp/pip-req-build-vusy7_zy Running command git checkout -q b8c6c04e60f2ef9825ffd5491827c8361c27afd7 error: subprocess-exited-with-error × python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [7 lines of output] Traceback (most recent call last): File "<string>", line 2, in <module> File "<pip-setuptools-caller>", line 34, in <module> File "/tmp/pip-install-o_tcq4qz/pyscf_509cdee782a644c295e9dafa0ab6b1bf/setup.py", line 202, in <module> np_blas = numpy.__config__.get_info('blas_opt') ^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: module 'numpy.__config__' has no attribute 'get_info' [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details. CondaEnvException: Pip failed
unit-tests (windows-latest, 3.9)
Terminal profiles are not available for system level installs
unit-tests (windows-latest, 3.9)
Terminal profiles are not available for system level installs
unit-tests (windows-latest, 3.9)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
unit-tests (windows-latest, 3.9)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
unit-tests (windows-latest, 3.9)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
unit-tests (windows-latest, 3.9)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
unit-tests (windows-latest, 3.9)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
unit-tests (windows-latest, 3.9)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
unit-tests (windows-latest, 3.9)
Pip subprocess error: Running command git clone --filter=blob:none --quiet https://github.com/diffqc/dqclibs.git 'C:\Users\runneradmin\AppData\Local\Temp\pip-req-build-qpzc46cq' Running command git clone --filter=blob:none --quiet https://github.com/hackingmaterials/matminer.git 'C:\Users\runneradmin\AppData\Local\Temp\pip-req-build-1kj3ixru' Running command git clone --filter=blob:none --quiet https://gitlab.com/libxc/libxc.git 'C:\Users\runneradmin\AppData\Local\Temp\pip-req-build-ebjt11v4' Running command git checkout -q b8c6c04e60f2ef9825ffd5491827c8361c27afd7 WARNING: The candidate selected for download or install is a yanked version: 'types-pkg-resources' candidate (version 0.1.0 at https://files.pythonhosted.org/packages/45/f1/27ccc700c598075ff2507c078a83f173154248b73bde31cbce21ff991006/types_pkg_resources-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/types-pkg-resources/)) Reason for being yanked: Use types-setuptools instead error: subprocess-exited-with-error � python setup.py bdist_wheel did not run successfully. \u2502 exit code: 1 \u2570\u2500> [55 lines of output] 0.1.1 running bdist_wheel running build running build_py creating build\lib.win-amd64-cpython-39\dqclibs copying dqclibs\api.py -> build\lib.win-amd64-cpython-39\dqclibs copying dqclibs\_version.py -> build\lib.win-amd64-cpython-39\dqclibs copying dqclibs\__init__.py -> build\lib.win-amd64-cpython-39\dqclibs creating build\lib.win-amd64-cpython-39\dqclibs\libs copying dqclibs\libs\__init__.py -> build\lib.win-amd64-cpython-39\dqclibs\libs creating build\lib.win-amd64-cpython-39\dqclibs\tests copying dqclibs\tests\test_libs.py -> build\lib.win-amd64-cpython-39\dqclibs\tests copying dqclibs\tests\__init__.py -> build\lib.win-amd64-cpython-39\dqclibs\tests copying dqclibs\_version.txt -> build\lib.win-amd64-cpython-39\dqclibs running build_ext cmake -SC:\Users\runneradmin\AppData\Local\Temp\pip-req-build-qpzc46cq\dqclibs\libs -Bbuild\temp.win-amd64-cpython-39\Release -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=C:\Users\runneradmin\AppData\Local\Temp\pip-req-build-qpzc46cq\build\lib.win-amd64-cpython-39\dqclibs -- Building for: Visual Studio 17 2022 CMake Deprecation Warning at CMakeLists.txt:15 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument <min> value or use a ...<max> suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is MSVC 19.41.34123.0 -- The CXX compiler identification is MSVC 19.41.34123.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: C:/Program Files/Microsoft Visual Studio/2022/Enterprise/VC/Tools/MSVC/14.41.34120/bin/Hostx64/x64/cl.exe - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: C:/Program Files/Microsoft Visual Studio/2022/Enterprise/VC/Tools/MSVC/14.41.34120/bin/Hostx64/x64/cl.exe - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - not found -- Found Threads: TRUE -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Looking for ffsll -- Looking for ffsll - not found CMake Error at C
unit-tests (windows-latest, 3.9)
CondaEnvException: Pip failed
unit-tests (ubuntu-latest, 3.10)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
unit-tests (ubuntu-latest, 3.8)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)