DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
- python==3.8.3
- numpy==1.19.2
- scipy==1.5.0
- scikit-learn==0.22.1
- networkx==2.4
- torch==1.6.0
- dgl==0.4.3post2
- click==7.1.2
- ruamel.yaml==0.16.6
- biopython==1.78
- tqdm==4.47.0
- logzero==1.5.0
- joblib==0.16.0
./scripts/preprocessing.sh
./scripts/run_mf.sh
./scripts/run_bp.sh
./scripts/run_cc.sh