Evaluation metrics for scvi-tools models
This package is now merged into the scvi-tools package and is accessible via the scvi.criticism
submodule.
As part of the transition, we've also removed the generic plotting utilities. We'll give some plotting examples in upcoming scvi tutorials but otherwise will leave the freedom to end-users to use their custom plotting for their specific use case(s).
Thanks for using this tool and please leave any future feedback under scvi-tools issues as this repo will be archived.
OLD INSTRUCTIONS 👇
Please refer to the documentation.
You need to have Python 3.8 or newer installed on your system. If you don't have Python installed, we recommend installing Miniconda.
- Install the latest release of
scvi-criticism
fromPyPI <https://pypi.org/project/scvi-criticism/>
_:
pip install scvi-criticism
- Install the latest development version:
pip install git+https://github.com/YosefLab/scvi-criticism.git@main
See the changelog.
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
N/A
Some of the code in this package was adapted from draft code authored by @adamgayoso.