v1.1.30-alpha

What's Changed

• Merge to dev by @Yasas1994 in #13
• Merge dev 1.1.30a0 by @Yasas1994 in #14
• Dev by @Yasas1994 in #15
• bug fix by @Yasas1994 in #16
• bug fix by @Yasas1994 in #17
• bug fix by @Yasas1994 in #18
• jaeger_parallel bug fix by @Yasas1994 in #19

Full Changelog: v1.1.26...v1.1.30-alpha

v1.1.26

version 1.1.26

Full Changelog: v1.1.23...v1.1.26

• Added CHANGELOG.md
• pypi version 1.1.26
• Better error messages and handling
• Easy installation via bioconda and pip
• Significant speed improvements compared to 1.1.23
• New prediction reliability estimation module
• New prophage prediction mode (unstable)
• New output fields
  1. entropy (Another measure of prediction confidence; lower the better)
  2. realiability_score (confidence in the predicion ; higher the better)
  3. host_contam (whether there are host like regions)
  4. prophage_contam (whether there are phage like regions)
  5. Bacteria_var (variance of Bacteria_score)
  6. Phage_var (variance of Phage_score)
  7. Eukarya_var (variance of Eukarya_score)
  8. Archaea_var (variance of Archaea_score)

Jaeger v1.1.23

Notes

• Fixed a bug that prevented GPU utilization.
• Added support for manually setting the fragment size.
• Fixed wrong version number

What's Changed

• merged by @Yasas1994 in #5
• Merge pull request #5 from Yasas1994/Jaeger-AA by @Yasas1994 in #6

Full Changelog: v1.1.22...v1.1.23

Jaeger v1.1.22

This release bring a python API to Jaeger enabling easy integration of Jaeger to python scripts and packages.

What's Changed

• update md file by @Yasas1994 in #3
• Jaeger aa dev by @Yasas1994 in #4

Full Changelog: v1.1.2...v1.1.21

v1.1.1

This release replaces the LSTM block with a dilated CNN block.

JaegerAA

The latest release of Jaeger uses numerically encoded six-frame translated nucleotide sequences and has better performance according to benchmarks.

JaegerNT

JaegerNT uses one-hot encoded nucleotide sequence vectors for feature extraction.