🔖 v0.5.5 #44
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| permissions: | |
| contents: write | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: "conda-incubator/setup-miniconda@v2" | |
| with: | |
| python-version: 3.11 | |
| auto-activate-base: false | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge,bioconda,defaults | |
| channel-priority: strict | |
| auto-update-conda: true | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - uses: actions/cache@v2 | |
| with: | |
| key: ${{ github.ref }} | |
| path: .cache | |
| - run: pip install hatch | |
| - run: sudo apt-get update && sudo apt-get install -y llvm | |
| - run: sudo apt-get -y install graphviz | |
| - name: Run tests | |
| shell: bash | |
| run: hatch run snakemake:cov | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |