🎨 rename enum type #38
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name: tests | |
on: | |
push: | |
branches: | |
- master | |
- main | |
permissions: | |
contents: write | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: "conda-incubator/setup-miniconda@v2" | |
with: | |
python-version: 3.11 | |
auto-activate-base: false | |
miniforge-variant: Mambaforge | |
channels: conda-forge,bioconda,defaults | |
channel-priority: strict | |
auto-update-conda: true | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.11' | |
- uses: actions/cache@v2 | |
with: | |
key: ${{ github.ref }} | |
path: .cache | |
- run: pip install hatch | |
- run: sudo apt-get update && sudo apt-get install -y llvm | |
- run: sudo apt-get -y install graphviz | |
- name: Run tests | |
shell: bash | |
run: hatch run snakemake:cov | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v3 | |