autotarq.sh
Assumes you are in a parent directly with subdirectories that contain .P and header files. Script is supposed to:
- search for P files and their headers
- analyze using Tarquin command line
- spit out a master .csv file with all the info you want
fsl_mrs_proc.sh
example usage:
fsl_mrs_proc.sh P38400 fsl_mrs_proc_new
Assumes you are in the directory with the Pfile
Script will run fsl_mrs_proc steps
[note: you should have the most up-to-date version of fsl_mrs installed... usually through a conda virtual env and remove what was installed with fsl installation]