Merge pull request #260 from WISDEM/new_install

All Conda install

.github/workflows/CI_WEIS.yml

@@ -16,7 +16,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: ["ubuntu-latest", "macOS-latest"]
+        os: ["ubuntu-latest", "macOS-latest"] #, "windows-latest"]
         python-version: ["3.9","3.10","3.11"]
 
     steps:
@@ -38,43 +38,47 @@ jobs:
           environment-file: environment.yml
           activate-environment: test
           auto-activate-base: false
-
-      # Install dependencies of WISDEM specific to mac # libgcc openblas libopenblas
-      - name: Add dependencies mac specific
-        if: contains( matrix.os, 'mac')
-        run: |
-            conda install -y petsc4py mpi4py openmpi compilers
 
-      # Install dependencies of WISDEM specific to windows
       - name: Add dependencies windows specific
         if: contains( matrix.os, 'windows')
         run: |
-          conda install -y m2w64-toolchain libpython
+          conda install -y -c intel intel-openmp mkl
       
-      # Install dependencies of WEIS specific to ubuntu
       - name: Add dependencies ubuntu specific
-        if: contains( matrix.os, 'ubuntu')
-        # (if you use the shell here, cannot use 'compiler' package otherwise get link problems to system libraries
-        # Mpi only seems to work with the shell command though, so instead rely on system compilers
+        if: false == contains( matrix.os, 'windows')
         run: |
           conda install -y petsc4py mpi4py openmpi
-          python -c "import platform; print(platform.node())"
+      
+      - name: Add test packages
+        run: |
+          conda install -y pytest pytest-cov coveralls
             
       - name: Show custom environment
         run: |
             conda list
-            which -a gfortran
             printenv | sort
-
-      # Debugging session
-      #- name: Setup tmate session
-      #  if: contains( matrix.os, 'mac')
-      #  uses: mxschmitt/action-tmate@v3
           
       # Install WEIS
       - name: Install WEIS
         run: |
-          python setup.py develop
+          pip install -e .
+
+      # Debugging session
+      #- name: Setup tmate session
+      #  if: contains( matrix.os, 'windows')
+      #  uses: mxschmitt/action-tmate@v3
+
+      #- name: Show openfast environment
+      #  run: |
+      #      which -a openfast
+      #      cd /c/Miniconda3/envs/test/Library/bin/
+      #      ls *fast*.exe
+      #      ls *fast*.dll
+      #      openfast -h
+      #      python -c "import ctypes; ctypes.cdll.LoadLibrary('openfastlib.dll')"
+      #      ls *fast*.dll
+      #      cd examples/03_NREL5MW_OC3_spar
+      #      python weis_driver.py
 
       # List the collected tests for debugging purposes
       - name: List tests
@@ -96,4 +100,3 @@ jobs:
         #  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         #run: |
         #  coveralls --service=github
-

.github/workflows/run_exhaustive_examples.yml

@@ -34,87 +34,17 @@ jobs:
           environment-file: environment.yml
           activate-environment: test
           auto-activate-base: false
-
-          #miniforge-variant: Mambaforge
-          #channels: conda-forge
-          #extra-specs: |
-          #  python=${{ matrix.python-version }}
-          #  mpi4py
-          #  petsc4py
-          #  openmpi
-          #  sel(osx): compilers
-          #  sel(win): m2w64-toolchain
-          #  sel(win): libpython`
-
-      # # Even miniconda gets bogged down- try mamba
-      # - name: Install Conda environment with Micromamba
-      #   uses: mamba-org/provision-with-micromamba@main
-      #   with:
-      #     environment-file: environment.yml
-      #     environment-name: test
-      #     channels: conda-forge
-      #     extra-specs: |
-      #       python=${{ matrix.python-version }}
-      #       mpi4py
-      #       petsc4py
-      #       openmpi
-      #       sel(osx): compilers
-      #       sel(win): m2w64-toolchain
-      #       sel(win): libpython`
-
-      # This is the more official way to do miniconda, but it messes with the GitHub worker environment and shell quite a bit
-      #- uses: conda-incubator/setup-miniconda@v2
-      #  # https://github.com/marketplace/actions/setup-miniconda
-      #  with:
-      #    miniconda-version: "latest"
-      #    channels: conda-forge
-      #    auto-update-conda: true
-      #    python-version: ${{ matrix.python-version }}
-      #    environment-file: environment.yml
-      #    activate-environment: test
-      #    auto-activate-base: false
-
-      # This is a less official, but more lightweight way to do miniconda
-      #- uses: s-weigand/setup-conda@v1
-      #  # https://github.com/marketplace/actions/setup-conda
-      #  with:
-      #    update-conda: true
-      #    python-version: ${{ matrix.python-version }}
-      #    conda-channels: conda-forge
-      #    activate-conda: true
-      #- run: conda env update --file environment.yml
-
-      #- name: Show custom environment
-      #  shell: bash
-      #  run: |
-      #      cat $GITHUB_ENV
-      #      printenv
-
-      # Install dependencies of WISDEM specific to windows
-      #- name: Add dependencies mac specific
-      #  if: contains( matrix.os, 'mac')
-      #  run: |
-      #      conda install -y compilers
-      #      gfortran --version
-
-      # Install dependencies of WISDEM specific to windows
-      #- name: Add dependencies windows specific
-      #  if: contains( matrix.os, 'windows')
-      #  run: |
-      #    conda install -y m2w64-toolchain libpython
 
       # Install dependencies of WEIS specific to ubuntu
       - name: Add dependencies ubuntu specific
         if: false == contains( matrix.os, 'windows')
-       # (if you use the shell here, cannot use 'compiler' package otherwise get link problems to system libraries
-       # Mpi only seems to work with the shell command though, so instead rely on system compilers
         run: |
           conda install -y petsc4py mpi4py openmpi
-       # python -c "import platform; print(platform.node())"
 
       - name: Show custom environment
         run: |
             conda list
+            printenv | sort
 
       # Debugging session
       #- name: Setup tmate session
@@ -123,12 +53,13 @@ jobs:
       # Install WEIS
       - name: Install WEIS
         run: |
-          python setup.py develop
+          pip install -e .
 
       # Test walkthrough notebook
       - name: Test postprocessing notebooks
         run: |
           cd examples/16_postprocessing
+          pip install gdown
           gdown --no-check-certificate 1AtLjjX5xpPqlHkfwDqeUj6VBMOYWcjmV
           unzip outputs
           treon plot_FAST.ipynb