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Variant search #164

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jstone-dev opened this issue Apr 15, 2024 · 2 comments · Fixed by #184
Closed

Variant search #164

jstone-dev opened this issue Apr 15, 2024 · 2 comments · Fixed by #184
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@jstone-dev
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jstone-dev commented Apr 15, 2024

On the score set screen, users should be able to search for variants.

The result of a search should be a list of matching variants, allowing the user to navigate to a variant screen. (See #165.)

Since we do not yet have variants mapped to reference genomes, search will occur only in the scope of an individual score set, and coordinates will be relative to its target gene(s).

@jstone-dev
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Search input remains to be determined.

  • MaveHGVS strings
    • We should probably not require a target gene to be specified, and a given HGVS string might match variants in multiple targets.
    • Shall we expand search result to include all multiple-mutation variants that include the given variation(s)?
  • Offsets?

Users should also be able to select a variant by clicking on the heatmap of single-AA variants.

@bencap bencap self-assigned this Apr 24, 2024
@bencap bencap linked a pull request May 2, 2024 that will close this issue
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bencap commented May 15, 2024

@bencap bencap closed this as completed May 15, 2024
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