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Update playbook.yml
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install sbgrid script
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almed-uu authored Dec 16, 2024
1 parent 162e58a commit 0009b1b
Showing 1 changed file with 25 additions and 43 deletions.
68 changes: 25 additions & 43 deletions playbook.yml
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---
- name: Example component
hosts: localhost # On ResearchCloud, the target host is always simply 'localhost'.
vars:
# vars:
# You can define variables here.
# One use for this is to ensure that variables expected to be passed from the SRC portal have sane defaults.
# For example:
_src_component_foo: "{{ src_component_foo | default('fallback value') }}"
_src_component_bar: "Xone,Xtwo,Xthree"
_src_component_boolean: "{{ src_component_boolean | default(true, true) | bool }}"
# _src_component_foo: "{{ src_component_foo | default('fallback value') }}"
# _src_component_bar: "Xone,Xtwo,Xthree"
# _src_component_boolean: "{{ src_component_boolean | default(true, true) | bool }}"
# But of course you can also define ordinary variables:
testfile: /tmp/test
test_pip_packages: []
# testfile: /tmp/test
# test_pip_packages: []
gather_facts: true

roles:
- role: uusrc.general.fact_regular_users
# - role: uusrc.general.fact_regular_users

tasks:
# Some example tasks below to introduce Ansible

- name: Loop over all non-system users and display their names
ansible.builtin.debug:
msg: The user {{ item.user }} exists on the system.
with_items: "{{ fact_regular_users }}"
when: ansible_os_family == 'Debian' # we can use Ansible OS facts because we have set gather_facts to true

- name: This is a block of tasks that belong together
when: _src_component_boolean # this condition is applied to all tasks in the block
tags: molecule-idempotence-notest # same for tags
block:

- name: Copy some content to a file
ansible.builtin.copy:
dest: "{{ testfile }}"
mode: "0700"
owner: root
group: root
content: "{{ _src_component_bar | split | map('regex_replace', 'X', '') | join }}" # You can create pipes using filters
# src: foo.txt # instead of 'content', you can also pass the 'src' argument to copy an entire file

- name: Cat the contents of this file
ansible.builtin.command:
cmd: cat {{ testfile }}
register: cat_testfile # store the results of this module in a new variable

- name: Debug the results of our cat command
ansible.builtin.debug:
var: cat_testfile.stdout

- name: Unlike the command module, shell module can use shell features like redirection
ansible.builtin.shell:
cmd: cat {{ testfile }} > /tmp/test2

- name: Install a number of pip packages
ansible.builtin.pip: # the pip module has many useful arguments, for instance related to venvs
name: "{{ test_pip_packages }}"
- name: Download SBGrid
ansible.builtin.get_url:
url: https://sbgrid.org/downloads/latest/sbgrid-cli_linux.tar.gz
dest: /tmp/sbgrid_install.tar.gz
- name: Create SBGrid directory
ansible.builtin.file:
path: /usr/local/sbgrid
owner: root
group: root
mode: '0755'
stage: directory
- name: Extract SBGrid tar file
ansible.builtin.unarchive:
src: /tmp/sbgrid_install.tar.gz
dest: /usr/local/sbgrid
- name: Install SBGrid
ansible.builtin.command:
cmd: /usr/local/sbgrid/sbgrid-cli activate {{license_lab}} {{license_user}} {{license_key}} --target /usr/local/sbgrid --skip-folder-checking

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